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Published July 18, 2018 | Version v0.2.0
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Oshlack/STRetch: STRetch v0.2.0

Authors/Creators

Description

  • Reimplement estimateSTR.R in Python (now estimateSTR.py), removing R as a STRetch dependancy
  • Generate more informative error messages for example for missing bam file CIGAR strings, empty or missing intermediate files, no reads aligned to STR decoys
  • Stricter p value correction
  • Script to convert Tandem Repeats Finder dat format to bed format, allowing custom reference genomes to be used ('TRFdat_to_bed.py')
  • Updates to comply with latest version of Pandas (v0.23.x)

Files

Oshlack/STRetch-v0.2.0.zip

Files (34.1 kB)

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Additional details

Related works

Is supplement to
https://github.com/Oshlack/STRetch/tree/v0.2.0 (URL)