Published August 1, 2024
| Version v1
Dataset
Open
Data - AlphaFold2 Predicts Alternative Conformation Populations in Green Fluorescent Protein Variants
Authors/Creators
-
1.
CIC bioGUNE
Description
MSAs.zip Multiple sequences alignments generated by AlphaFold2 structure prediction of 7 engineered GFPs.
AF2_models_column_masking.zip AlphaFold2 models of the alternative conformations of 7 engineered GFPs.
MD_trajectories_PyMOL.zip Molecular dynamics trajectories (PyMOL sessions) of the alternative conformations of 7 engineered GFPs.
MD_analysis.zip Root mean square deviation and per-residue root mean square fluctuations along molecular dynamics simulations of 7 engineered GFPs.
rmsd_values.zip Root mean square deviation relative to crystallographic GFP structure for AlphaFold2 models and molecular dynamics frames (global and central alpha-helix)
Files
AF2_models_column_masking.zip
Files
(590.8 MB)
| Name | Size | Download all |
|---|---|---|
|
md5:018177be7042fcc832baefc212dc9495
|
157.6 MB | Preview Download |
|
md5:281ca67e7fbe1e54789e237e3403c0e9
|
214.6 kB | Preview Download |
|
md5:3e1009239d1a96f694f4681820966d52
|
432.4 MB | Preview Download |
|
md5:b511a7a6f5778f1f31c0356554c0bf41
|
425.2 kB | Preview Download |
|
md5:28f3cffe97e3cfa2b02d95a525f1418a
|
161.6 kB | Preview Download |
Additional details
Related works
- Is supplement to
- 10.1021/acs.jcim.4c01388 (DOI)
Funding
- Agencia Estatal de Investigación
- RYC2022-036457-I RYC2022-036457-I
- Agencia Estatal de Investigación
- EUR2023-143462 EUR2023-143462
- Agencia Estatal de Investigación
- PID2021-125946OB-I00 PID2021-125946OB-I00
- Agencia Estatal de Investigación
- PDC2022-133725-C22 PDC2022-133725-C22