Published December 15, 2020 | Version v1

Population Genetic Structure of A Marine Pelagic Egg Producer and Popular Marine Aquarium Species, the Mandarinfish Synchiropus splendidus

  • 1. State Key Laboratory of Marine Pollution, City University of Hong Kong, Hong Kong SAR, China. E-mail: priscilla_ty_leung@yahoo.com.hk (Leung)
  • 2. Simon F.S. Li Marine Science Laboratory, The Chinese University of Hong Kong, Shatin, Hong Kong SAR, China.
  • 3. State Key Laboratory of Marine Environmental Science, College of Ocean and Earth Sciences, Xiamen University, Xiamen, Fujian, China. E-mail: minliuxm@xmu.edu.cn (Liu)
  • 4. PSL Research University: EPHE-UPVD-CNRS, USR 3278 CRIOBE, Université de Perpignan, 52 Avenue Paul Alduy, 66860 Perpignan Cedex, France and Laboratoire d'Excellence CORAIL. E-mail: planes@univ-perp.fr (Planes)
  • 5. School of Biological Sciences, Swire Institute of Marine Science, The University of Hong Kong, Pokfulam Road, Hong Kong SAR, China. E-mail: yjsadovy@hku.hk (Sadovy de Mitcheson)

Description

Leung, Priscilla T.Y., Ma, Ka Yan, Liu, Min, Planes, Serge, Mitcheson, Yvonne Sadovy de (2020): Population Genetic Structure of A Marine Pelagic Egg Producer and Popular Marine Aquarium Species, the Mandarinfish Synchiropus splendidus. Zoological Studies 59 (68): 1-10, DOI: 10.6620/ZS.2020.59-68, URL: http://dx.doi.org/10.5281/zenodo.8069136

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References

  • Almany GR, Berumen ML, Thorrold SR, Planes S, Jones GP. 2007. Local replenishment of coral reef fish populations in a marine reserve. Science 316:742-744. doi:10.1126/science.1140597.
  • Almany GR, Planes S, Thorrold SR, Berumen ML, Bode M, Saenz-Agudelo P, Bonin MC, Frisch AJ, Harrison HB, Messmer V, Nanninga GB, Priest MA, Srinivasan M, Sinclair-Taylor T, Williamson DH, Jones GP. 2017. Larval fish dispersal in a coralreef seascape. Nat Ecol Evol 1:0148. doi:10.1038/s41559-017- 0148.
  • Belkhir K, Borsa P, Chikhi L, Raufaste, N, Bonhomme F. 2004. GENETIX 4.05, logiciel sous Windows pour la genetique des populations. Laboratoire Genome, Populations, Interactions, CNRS UMR 5171. Universite de Montpellier II, Montpellier, France.
  • Bradbury IR, Laurel B, Snelgrove PV, Bentzen P, Campana SE. 2008. Global patterns in marine dispersal estimates: the influence of geography, taxonomic category and life history. Proc R Soc Lond B Biol Sci 275:1803-1809. doi:10.1098/rspb.2008.0216.
  • Buston PM, Bogdanowicz SM, Wong A, Harrison RG. 2007. Are clownfish groups composed of close relatives? An analysis of microsatellite DNA variation in Amphiprion percula. Mol Ecol 16:3671-3678. doi:10.1111/j.1365-294X.2007.03421.x.
  • Chan TTC, Sadovy Y. 1998. Profile of the marine aquarium fish trade in Hong Kong. Aquar Sci Conserv 2:197-213. doi:10.1023/ A:1009644730784.
  • Chapuis MP, Estoup A. 2007. Microsatellite null alleles and estimation of population differentiation. Mol Biol Evol 24:621-631. doi:10.1093/molbev/msl191.
  • Cowen RK, Sponaugle S. 2009. Larval dispersal and marine population connectivity. Annu Rev Mar Sci 1:443-466. doi:10.1146/annurev.marine.010908.163757.
  • Dempster AP, Laird NM, Rubin DB. 1977. Maximum likelihood from incomplete data via the EM algorithm. J R Stat Soc B 39:1-38. doi:10.1111/j.2517-6161.1977.tb01600.x.
  • DiBattista JD, Berumen ML, Gaither MR, Rocha LA, Eble JA, Choat JH, Craig MT, Skillings DJ, Bowen BW. 2013. After continents divide: comparative phylogeography of reef fishes from the Red Sea and Indian Ocean. J Biogeogr 40:1170-1181. doi:10.1111/ jbi.12068.
  • Earl DA. 2012. STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method. Conserv Genet Resour 4:359-361. doi:10.1007/ s12686-011-9548-7.
  • Excoffier L, Lischer HEL. 2010. Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows. Mol Ecol Resour 10:564-567. doi:10.1111/ j.1755-0998.2010.02847.x.
  • Faubet P, Waples RS, Gaggiotti OE. 2007. Evaluating the performance of a multilocus Bayesian method for the estimation of migration rates. Mol Ecol 16:1149-66. doi:10.1111/j.1365- 294X.2007.03218.x.
  • Fauvelot C, Bernardi G, Planes S. 2003. Reduction in the mitochondrial DNA diversity of coral reef fish provide evidence of bottlenecks resulting from Holocene sea-level change. Evolution 57:1571-1583. doi:10.1111/j.0014-3820.2003. tb00365.x.
  • Frisk MG, Jordaan A, Miller TJ. 2014. Moving beyond the current paradigm in marine population connectivity: are adults the missing link? Fish Fish 15:242-254. doi:10.1111/faf.12014.
  • Hanebuth T, Stattegger K, Grootes PM. 2000. Rapid flooding of the Sunda Shelf: a late-glacial sea-level record. Science 288:1033- 1035. doi:10.1126/science.288.5468.1033.
  • Haq BU, Hardenbol J, Vail PR. 1987. Chronology of fluctuating sea levels since the Triassic. Science 235:1156-1167. doi:10.1126/ science.235.4793.1156.
  • Horne JB, van Herwerden L, Choat JH, Robertson DR. 2008. High population connectivity across the Indo-Pacific: congruent lack of phylogeographic structure in three reef fish congeners. Mol Phylogenet Evol 49:629-638. doi:10.1016/j.ympev.2008.08.023.
  • Hulce D, Li X, Snyder-Leiby T, Liu CJ. 2011. GeneMarker® genotyping software: Tools to increase the statistical power of DNA fragment analysis. J Biomol Tech 22:S35.
  • Jombart T, Devillard S, Balloux F. 2010. Discriminant analysis of principal components: a new method for the analysis of genetically structured populations. BMC genetics 11:94. doi:10.1186/1471-2156-11-94.
  • Jones GP, Planes S, Thorrold SR. 2005. Coral reef fish larvae settle close to home. Curr Biol 15:1314-1318. doi:10.1016/ j.cub.2005.06.061.
  • Klanten OS, Choat JH, van Herwerden L. 2007. Extreme genetic diversity and temporal rather than spatial partitioning in a widely distributed coral reef fish. Mar Biol 150:659-670. doi:10.1007/ s00227-006-0372-7.
  • Kopelman NM, Mayzel J, Jakobsson M, Rosenberg NA, Mayrose I. 2015. CLUMPAK: a program for identifying clustering modes and packaging population structure inferences across K. Mol Ecol Resour 15:1179-1191. doi:10.1111/1755-0998.12387.
  • Leray M, Beldade R, Holbrook SJ, Schmitt RJ, Planes S, Bernardi G. 2010. Allopatric divergence and speciation in coral reef fish: The three-spot Dascyllus, Dascyllus trimaculatus, species complex. Evolution 64:1218-1230. doi:10.1111/j.1558-5646.2009.00917. x.
  • Lourie SA, Green DM, Vincent ACJ. 2005. Dispersal, habitat differences, and comparative phylogeography of Southeast Asian seahorse (Syngnathidae: Hippocampus). Mol Ecol 14:1073- 1094. doi:10.1111/j.1365-294X.2005.02464.x.
  • Lowe WH, Allendorf FW. 2010. What can genetics tell us about population connectivity? Mol Ecol 19:3038-3051. doi:10.1111/ j.1365-294X.2010.04688.x.
  • Ma KY, Chow LM, Wong KJH, Chen H-N, Ip BHY, Schubart CD, Tsang LM, Chan BKK, Chu KH. 2019. Speciation pattern of the horned ghost crab Ocypode ceratophthalmus (Pallas, 1772): An evaluation of the drivers of Indo-Pacific marine biodiversity using a widely distributed species. J Biogeog 45:2658-2668. doi:10.1111/jbi.13443.
  • Ma KY, van Herwerden L, Newman SJ, Berumen ML, Choat JH, Chu KH, Sadovy de Mitcheson Y. 2018. Contrasting population genetic structure in three aggregating groupers (Percoidei: Epinephelidae) in the Indo-West Pacific: the importance of reproductive mode. BMC Evol Biol 18:180. doi:10.1186/ s12862-018-1284-0.
  • Monismith SG, Barkdull MK, Nunome Y, Mitarai S. 2018. Transport between Palau and the Eastern Coral Triangle: Larval connectivity or near misses. Geophys Res Lett 45:4974-4981. doi:10.1029/2018GL077493.
  • Pasteur N, Pasteur G, Bonhomme F, Catalan J, Britton-Davidian J. 1987. Manuel de Genetique Par Electrophoreses Des Proteines. Collection Techniques et Documentation. Lavoisier, Paris, France.
  • Peakall R, Smouse PE. 2012. GenAlEx 6.5: genetic analysis in Excel. Population genetic software for teaching and research - an update. Bioinformatics 28:2537-2539. doi:10.1093/ bioinformatics/bts460.
  • Pineda J, Hare JA, Sponaugle S. 2007. Larval transport and dispersal in the coastal ocean and consequences for population connectivity. Oceanography 20: 22-39. doi :10.5670/ oceanog.2007.27.
  • Pinsky ML, Saenz-Agudelo P, Salles OC, Almany GR, Bode M, Berumen ML, Andrefouet S, Thorrold SR, Jones GP, Planes S. 2017. Marine dispersal scales are congruent over evolutionary and ecological time. Curr Biol 27:149-154. doi:10.1016/ j.cub.2016.10.053.
  • Planes S, Fauvelot C. 2002. Isolation by distance and vicariance driving genetic structure of a coral reef fish in the Pacific Ocean. Evolution 56:378-399. doi:10.1111/j.0014-3820.2002.tb01348.x.
  • Planes S, Jones GP, Thorrold SR. 2009. Larval dispersal connects fish populations in a network of marine protected areas. Proc Natl Acad Sci 106:5693-5697. doi:10.1073/pnas.0808007106.
  • Pritchard JK, Stephens M, Donnelly P. 2000. Inference of population structure using multilocus genotype data. Genetics 155:945-959.
  • Puebla O, Bermingham E, McMillan WO. 2012. On the spatial scale of dispersal in coral reef fishes. Mol Ecol 21:5675-5688. doi:10.1111/j.1365-294X.2012.05734.x.
  • Randall JE, Allen GR Allen, Steene RC. 1990. Fishes of the Great Barrier Reef and Coral Sea. University of Hawaii Press, Honolulu, Hawaii, USA.
  • Rasotto MB, Sadovy de Mitcheson Y, Mitcheson G. 2010. Male body size predicts sperm number in the mandarinfish. J Zool 281:161- 167. doi:10.1111/j.1469-7998.2009.00688.x.
  • Raymond M, Rousset F. 1995. An exact test for population differentiation. Evolution 49:1280-1283. doi:10.2307/2410454.
  • Rice WR. 1989. Analyzing tables of statistical tests. Evolution 43:223-225. doi:10.1111/j.1558-5646.1989.tb04220.x.
  • Rousset F. 2008. GENEPOP'007: a complete re-implementation of the GENEPOP software for Windows and Linux. Mol Ecol Resour 8:10-106. doi:10.1111/j.1471-8286.2007.01931.x.
  • Sadovy Y, Mitcheson G, Rasotto MB. 2001. Early development of the mandarinfish, Synchiropus splendidus (Callionymidae), with notes on its fishery and potential for culture. Aqua Sci Conserv 3:253-263. doi:10.1023/A:1013168029479.
  • Shaklee JB, Allendorf FW, Morizot DC, Whitt GS. 1990. Gene nomenclature for protein-coding loci in fish. Trans Am Fish Soc 119:2-15. doi:10.1577/1548-8659(1990)119<0002:GNFPLI>2.3 .CO;2.
  • Shih HT, Poupin J. 2020. A new fiddler crab of Austruca Bott, 1973, closely related to A. perplexa (H. Milne Edwards, 1852) (Crustacea: Brachyura: Ocypodidae), from the South Pacific islands. Zool Stud 59:26. doi:10.6620/ZS.2020.59-26.
  • Simpson SD, Harrison HB, Claereboudt MR, Planes S. 2014. Long-distance dispersal via ocean currents connects Omani clownfish populations throughout entire species range. PLoS ONE 9:e107610. doi:10.1371/journal.pone.0107610.
  • Tittler R, Fahrig L, Villard MA. 2006. Evidence of large-scale source-sink dynamics and long-distance dispersal among wood thrush populations. Ecology 87:3029-3036. doi:10.1890/0012- 9658(2006)87[3029:EOLSDA]2.0.CO;2.
  • Weir BS, Cockerham CC. 1984. Estimating F -statistics for the analysis of population structure. Evolution 38:1358-1370. doi:10.2307/2408641.
  • Wilson GA, Rannala B. 2003. Bayesian inference of recent migration rates using multilocus genotypes. Genetics 163:1177-91.
  • Wright S. 1969. Evolution and the genetics of populations, vol. 2. The theory of gene frequencies. University of Chicago Press, Chicago Press. doi:10.2307/2172773.
  • Yokoyama Y, Lambeck K, Deckker PD, Johnston P, Fifield LK. 2000. Timing of the last glacial maximum from observed sea-level minima. Nature 406:713-716. doi:10.1038/35021035.
  • Zane L, Bargelloni L, Patarnello T. 2002. Strategies for microsatellite isolation: a review. Mol Ecol 11:1-16. doi:10.1046/j.0962- 1083.2001.01418.x.