Data accompanying "Identification of capsid-like proteins in venomous and parasitic animals"

This data accompanies the pub "Identification of capsid-like proteins in venomous and parasitic animals". The DOI for this pub is https://doi.org/10.57844/arcadia-14b2-6f27

Files and folders included: 

1. Manually annotated results of searching VOG HMMs against venom transcriptomes: Annotated_capsid_no_cutoffs_summary_with_seqs_05092024.xlsx

2. Manually annotated results of running preHGT on the genomes of venomous species: Annotated_hgt_results_venom_050924.xlsx

3. The genomes we input into preHGT: preHGT_input_genomes.csv

4. Genbank files of the genomic neighborhood of putatively horizontally transferred viral genes in the tick genome. There are seven GenBank files, one for each contig. Named with protein name.

5. BLAST results from searching putatively endogenized viral proteins against tick salivary transcriptomes:  TSA_blast_results.csv

6. Results from searching the putatively endogenized viral capsid proteins against AlphaFold/UniProt50 version 4, AlphaFold/Swiss-Prot version 4, and AlphaFold/Proteome version 4 using the Foldseek webserver: Foldseek_capsid_followup_05092024.xlsx

7. Newick files of the three trees displayed in Figure 3 and Figure 5 .