Genome-wide association study Summary statistics of Invasive melanoma vs controls, In situ Melanoma vs controls and In situ vs invasive melanoma (case-case)
Authors/Creators
Description
Genome-wide association study Summary statistics of Invasive melanoma vs controls, In situ Melanoma vs controls and In situ vs invasive melanoma (case-case). The first GWAS meta-analysis combines GWAS summary statistics of invasive melanoma from UK Biobank (as of August 2022), FinnGen release 9, QSkin Sun and Health Study and The Queensland Study of Melanoma: environmental and genetic associations (Q-MEGA) study.
The second GWAS meta-analysis combines GWAS summary statistics of in situ melanoma from UK Biobank (as of August 2022), FinnGen release 9, QSkin Sun and Health Study and The Queensland Study of Melanoma: environmental and genetic associations (Q-MEGA) study.
The third GWAS meta-analysis combines GWAS summary statistics of in situ vs invasive (case-case; in situ code 0, invasive code 1) melanoma from UK Biobank (as of August 2022), QSkin Sun and Health Study and The Queensland Study of Melanoma: environmental and genetic associations (Q-MEGA) study.
Columns
CHR Chromosome
SNP rsid
POS Base position HG Build 37
A1 effect allele
A2 Non-effect allele
A1FREQ Allele frequency of effect allele
BETA effect estimate of effect allele
SE standard error of effect estimate
PVAL two-tailed p value
DIRECTION the Direction of effect of the SNP in each cohort ( in the order UKBB, FINNGEN, QSKIN, QMEGA 610k, QMEGA OMNI)
N sample size
See