nextstrain/nextclade: 3.8.2

Ivan Aksamentov; Richard Neher; Cornelius Roemer; mt-gitlocalize; Anna (Anya) Parker; Victor Lin; Daniel Antonio Negrón; Nextstrain bot; John SJ Anderson; Thomas Sibley; Snyk bot; Emma Hodcroft; Actat; Alex Rubinsteyn; Björn Grüning; Bryan Tegomoh; Chaoran Chen; Christopher Bottoms; Finlay Maguire; John Huddleston; Jover Lee; Theo Sanderson; Elias Harkins

doi:10.5281/zenodo.12759773

Published July 17, 2024 | Version 3.8.2

Software Open

nextstrain/nextclade: 3.8.2

1. Biozentrum, University of Basel
2. @neherlab @nextstrain
3. @FredHutch / @blab / @nextstrain
4. @nextstrain
5. @nextstrain / @blab
6. @Snyk
7. @SwissTPH
8. University of North Carolina
9. University of Freiburg
10. ETH Zurich @cevo-public @GenSpectrum
11. Oklahoma Medical Research Foundation
12. Community Health & Epidemiology / Computer Science, Dalhousie University
13. @blab @nextstrain
14. The Francis Crick Institute

Nextclade 3.8.2

Fix detection of number of threads Nextclade Web

Sometimes Nextclade Web would detect incorrect number of available CPU threads and would create too many processing threads for processing. This could cause additional overhead and slowdown the runs. We observed this behavior on non_chromium based browsers, such as Firefox and Safari. This has been fixed now. The number of threads has been clamped to 3 by default. You can modify this in "Settings" dialog.

Installation and usage

📚 Documentation: docs.nextstrain.org/projects/nextclade

🌍 Nextclade Web: clades.nextstrain.org

🖥️ Nextclade CLI:

📥 Standalone native executables can be downloaded using the links in the "Assets" section just below. Mind the different operating systems and computer architectures.
🐋 Docker images are available on DockerHub
🐍 Conda package is available in bioconda channel.

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