Published July 17, 2024 | Version PHILOSOPI
Software Open

philosopi-everthine/philosopi-public: philosopi-public v1.0.0-alpha

Authors/Creators

Description

PHILOSOPI (Protein Homolog Islands Landscape Organization for Sequence Origin and Profile Indexing) is a protein sequence clustering and indexing method for comparative profiling. Here we provide a heuristic algorithm of neighborhood analysis in PHILOSOPI. This simple source code is wrtten in python3.

Prerequisites

  • Python 3.11 (https://www.python.org/)
  • Numpy 1.24.2 (https://numpy.org/)
  • Clustalo 1.2.2 (http://www.clustal.org/omega/)

How to Use

(Command line) python3 "neighborhood-analysis.py" -i distmat.txt -o output_edges.txt

Files

philosopi-everthine/philosopi-public-PHILOSOPI.zip

Files (3.3 kB)

Additional details

Related works

Is supplement to
Software: https://github.com/philosopi-everthine/philosopi-public/tree/PHILOSOPI (URL)