Muszeb/ENQUIRE: v3.0.1

We implemented new features after a first revision round of the manuscript:

1. We now distribute ENQUIRE also as a Docker Image, see here for more details.
2. We implemented e-searching and e-fetching of "Other Term" (OT) PubMed fields for tokenization and normalization of gene mentions.
3. We now also report PMIDs supporting significant co-occurrences in all node and edge tables (...Complete..., ...MeSH..., and ...Gene...). Additionally, node and edge tables of significant gene-gene co-occurrences (...Gene...) list Reactome Pathways and Reactions in which a gene-gene relation has been previously annotated.
4. We implemented over-representation analysis of ENQUIRE-derived gene sets against known Reactome pathways in the context-aware gene set reconstruction script.
5. We allow the users to extract the STRING reference network with node weights based on the ENQUIRE-reconstructed gene co-occurrence network in the context-aware pathway enrichment analysis script.

Full Changelog: https://github.com/Muszeb/ENQUIRE/compare/v2.0.0...v3.0.0