Published July 10, 2024
| Version v1.1.0
Software
Open
phillipnicol/scDist: scDist v1.1.0
Authors/Creators
Description
This update contains new functionality for post-hoc analysis and simulated data.
New functionality:
- The
distGenesfunction can be used to visualize the genes associated with the perturbation. - The generation of simulated data is simplified with the
simDatafunction. - The
scDist_treefunction performs the analysis at different resolutions of a given clustering. condition_v_celltype_distancecompares the condition perturbation to the inter-cell-type distances, providing a possible way to diagnose issues in annotation.
Changes to existing functionality:
- The
scDistfunction now has aweightsargument to allow different genes to be weighted differently in the calculation of the distance.
Files
phillipnicol/scDist-v1.1.0.zip
Files
(4.7 MB)
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md5:7a67e07d8b2ae59ab42f79efe0ab81ae
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Additional details
Related works
- Is supplement to
- Software: https://github.com/phillipnicol/scDist/tree/v1.1.0 (URL)