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Published July 10, 2024 | Version v1.1.0
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phillipnicol/scDist: scDist v1.1.0

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Description

This update contains new functionality for post-hoc analysis and simulated data.

New functionality:

  • The distGenes function can be used to visualize the genes associated with the perturbation.
  • The generation of simulated data is simplified with the simData function.
  • The scDist_tree function performs the analysis at different resolutions of a given clustering.
  • condition_v_celltype_distance compares the condition perturbation to the inter-cell-type distances, providing a possible way to diagnose issues in annotation.

Changes to existing functionality:

  • The scDist function now has a weights argument to allow different genes to be weighted differently in the calculation of the distance.

Files

phillipnicol/scDist-v1.1.0.zip

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