Published June 30, 2024 | Version v1
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Trackastra integration in TrackMate example

  • 1. ROR icon ETH Zurich

Description

Bacteria images and masks from:

    Van Vliet et al. Spatially Correlated Gene Expression in Bacterial Groups: The Role of Lineage History, Spatial Gradients, and Cell-Cell Interactions (2018)
    https://doi.org/10.1016/j.cels.2018.03.009
    
subset of timelapse trpL/150310-11

Initially included with Trackastra, resaved as a 2-channel ImageJ TIF, to be used with TrackMate. The authors and ownwer of this dataset are the authors of the article mentionned above.

Used to demonstrate the integration of Trackastra tracker in TrackMate 

  • Trackastra: https://doi.org/10.48550/arXiv.2405.15700
  • TrackMate: https://doi.org/10.48550/arXiv.2405.15700 

See https://imagej.net/plugins/trackmate/trackers/trackmate-trackastra for a tutorial using this dataset.

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Additional details

Related works

Is part of
Image: 10.5281/zenodo.268921 (DOI)