Overlooked bird species extinctions in Semideciduous Atlantic Forests

Supplemental material 1. R codes used for all analyses.

Supplemental material 2-5. Presence-absence data for Atlantic Forest endemic bird species according to 16 municipalities within and west of the Cerrado in the state of São Paulo, south-eastern Brazil. The "_2" denotes the species composition after the 1990s. The location according to the Cerrado of each municipality is indicated in Table 2. File named "nest.csv" and "nest2.csv" were used for the NODF analysis and refer to the pre- and post-1990s data, respectively. Files "old.csv" and "new.csv" were used for the rarefaction curves, and refer to pre- and post-1990s data, respectively. The "permanova.csv" file was used for the PERMANOVA analysis.