Published June 28, 2024 | Version v1
Dataset Open

UNITE+INSD 2024 Fungal ITS, ITS1, and ITS2 Reference Sequences

Creators

  • 1. Westerdijk Fungal Biodiversity Institute

Description

These datasets were created from the 2024 release (Abarenkov et al. 2024) of the UNITE+INSD database as reference sequences for and by dnabarcoder (Vu et al. 2022). The ITS1 and ITS2 sequences were extracted using ITSx (Bengtsson-Palme et al. 2013).

Files

Files (2.6 GB)

Name Size Download all
md5:e149e686f21fee228aafc9bab26c1b78
262.6 MB Download
md5:a2deecb84d0f322a7cde137a1c8c67f3
1.3 GB Download
md5:410d86963d5b5e5f32c1e97706f3897c
82.5 MB Download
md5:185a50d2b61b709f76674ab01f750e80
376.0 MB Download
md5:dd8677c31464b7afa35e13f83b613e07
229.4 MB Download
md5:71a9c8c70a2e770808049c86f268d5cf
378.5 MB Download

Additional details

References

  • Abarenkov, Kessy; Zirk, Allan; Piirmann, Timo; Pöhönen, Raivo; Ivanov, Filipp; Nilsson, R. Henrik; Kõljalg, Urmas (2024): Full UNITE+INSD dataset for Fungi. UNITE Community. 10.15156/BIO/2959330
  • Bengtsson-Palme, J., Ryberg, M., Hartmann, M., Branco, S., Wang, Z., Godhe, A., De Wit, P., Sánchez-García, M., Ebersberger, I., de Sousa, F., Amend, A., Jumpponen, A., Unterseher, M., Kristiansson, E., Abarenkov, K., Bertrand, Y.J.K., Sanli, K., Eriksson, K.M., Vik, U., Veldre, V. and Nilsson, R.H. (2013), Improved software detection and extraction of ITS1 and ITS2 from ribosomal ITS sequences of fungi and other eukaryotes for analysis of environmental sequencing data. Methods Ecol Evol, 4: 914-919. https://doi.org/10.1111/2041-210X.12073
  • Vu, D., Nilsson, R. H., & Verkley, G. J. M. (2022). Dnabarcoder: An open-source software package for analysing and predicting DNA sequence similarity cutoffs for fungal sequence identification. Molecular Ecology Resources, 22, 2793–2809. https://doi.org/10.1111/1755-0998.13651