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Published October 13, 2023 | Version 18.2
Software Open

sdt-python: Python library for fluorescence microscopy data analysis

  • 1. ROR icon BOKU University
  • 2. ROR icon TU Wien

Description

sdt-python is a collection of tools for analysis of fluorescence microscopy data.

It contains

  • algorithms for localization of fluorescent features in images
  • methods for evaluation of tracking data
  • functions to evaluate brightness data
  • as well as multi-color data
  • support for automated determination and correction of chromatic aberrations
  • methods for reading and writing single molecule data in various formats
  • handling of ROIs (both rectangular and described by arbitrary paths)
  • methods for simulation of fluorescence microscopy images
  • much more.

Files

Files (7.7 MB)

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md5:a0f0b85aadba312cfdccb0aeb6509535
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Additional details

Software

Repository URL
https://github.com/schuetzgroup/sdt-python
Programming language
Python
Development Status
Active