pymc-devs/pymc: v5.16.0

<!-- Release notes generated using configuration in .github/release.yml at main -->

What's Changed

Major Changes 🛠

• Standardize draws as parameter in sample_prior_predictive by @wd60622 in https://github.com/pymc-devs/pymc/pull/7366
• Allow opting out of model nesting by setting model=None by @ricardoV94 in https://github.com/pymc-devs/pymc/pull/7352
• Bump PyTensor dependency (which changes signature of RandomVariables) by @ricardoV94 in https://github.com/pymc-devs/pymc/pull/7370
• Move CustomDist logic to dedicated module and docs section by @markgreene74 in https://github.com/pymc-devs/pymc/pull/7363

New Features 🎉

• HSGP improvements by @AlexAndorra in https://github.com/pymc-devs/pymc/pull/7335
• Add more idata attributes for JAX samplers by @osyuksel in https://github.com/pymc-devs/pymc/pull/7360

Bugfixes 🪲

• Fix bug with compute_p for partially observed OrderedLogistic and OrderedProbit variables by @ricardoV94 in https://github.com/pymc-devs/pymc/pull/7349
• Avoid repeated status polling in smc by @aseyboldt in https://github.com/pymc-devs/pymc/pull/7351
• Fix bug when freezing model with partially observed RVs by @ricardoV94 in https://github.com/pymc-devs/pymc/pull/7388

Documentation 📖

• Fix broken links by @Armavica in https://github.com/pymc-devs/pymc/pull/7347

Maintenance 🔧

• Allow customizing truncation max_n_steps in Hurdle Mixtures by @tjburch in https://github.com/pymc-devs/pymc/pull/7339
• Add refresh call to progress bar in apply_function_over_dataset by @fonnesbeck in https://github.com/pymc-devs/pymc/pull/7343
• HSGP misc fixes by @bwengals in https://github.com/pymc-devs/pymc/pull/7342
• Fixed myst version to less than 1.0.0 (fixes graph squashing) by @hevansDev in https://github.com/pymc-devs/pymc/pull/7356
• Update readme example by @kiramclean in https://github.com/pymc-devs/pymc/pull/7358
• Fix import pymc.testing by @bomtall in https://github.com/pymc-devs/pymc/pull/7357
• Minor text improvements to the Introductory Overview of PyMC notebook (pymc_overview.ipynb) by @alimanfoo in https://github.com/pymc-devs/pymc/pull/7361
• Remove default initval for Flat variables by @ricardoV94 in https://github.com/pymc-devs/pymc/pull/7379
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/pymc-devs/pymc/pull/7371

New Contributors

• @hevansDev made their first contribution in https://github.com/pymc-devs/pymc/pull/7356
• @kiramclean made their first contribution in https://github.com/pymc-devs/pymc/pull/7358
• @bomtall made their first contribution in https://github.com/pymc-devs/pymc/pull/7357
• @alimanfoo made their first contribution in https://github.com/pymc-devs/pymc/pull/7361
• @osyuksel made their first contribution in https://github.com/pymc-devs/pymc/pull/7360
• @markgreene74 made their first contribution in https://github.com/pymc-devs/pymc/pull/7363

Full Changelog: https://github.com/pymc-devs/pymc/compare/v5.15.1...v5.16.0

<!-- Release notes generated using configuration in .github/release.yml at main -->

What's Changed

Major Changes 🛠

• Rename samples argument to draws in sample_prior_predictive by @wd60622 in https://github.com/pymc-devs/pymc/pull/7366
• Allow opting out of model nesting by setting model=None by @ricardoV94 in https://github.com/pymc-devs/pymc/pull/7352
• Bump PyTensor dependency (which changes signature of RandomVariables) by @ricardoV94 in https://github.com/pymc-devs/pymc/pull/7370
• Move CustomDist logic to dedicated module and docs section by @markgreene74 in https://github.com/pymc-devs/pymc/pull/7363

New Features 🎉

• HSGP improvements by @AlexAndorra in https://github.com/pymc-devs/pymc/pull/7335
• Add more idata attributes for JAX samplers by @osyuksel in https://github.com/pymc-devs/pymc/pull/7360

Bugfixes 🪲

• Fix bug with compute_p for partially observed OrderedLogistic and OrderedProbit variables by @ricardoV94 in https://github.com/pymc-devs/pymc/pull/7349
• Avoid repeated status polling in smc by @aseyboldt in https://github.com/pymc-devs/pymc/pull/7351
• Fix bug when freezing model with partially observed RVs by @ricardoV94 in https://github.com/pymc-devs/pymc/pull/7388

Documentation 📖

• Fix broken links by @Armavica in https://github.com/pymc-devs/pymc/pull/7347
• Fixed myst version to less than 1.0.0 (fixes graph squashing) by @hevansDev in https://github.com/pymc-devs/pymc/pull/7356
• Minor text improvements to the Introductory Overview of PyMC notebook (pymc_overview.ipynb) by @alimanfoo in https://github.com/pymc-devs/pymc/pull/7361

Maintenance 🔧

• Allow customizing truncation max_n_steps in Hurdle Mixtures by @tjburch in https://github.com/pymc-devs/pymc/pull/7339
• Add refresh call to progress bar in apply_function_over_dataset by @fonnesbeck in https://github.com/pymc-devs/pymc/pull/7343
• HSGP misc fixes by @bwengals in https://github.com/pymc-devs/pymc/pull/7342
• Update readme example by @kiramclean in https://github.com/pymc-devs/pymc/pull/7358
• Fix import pymc.testing by @bomtall in https://github.com/pymc-devs/pymc/pull/7357
• Remove default initval for Flat variables by @ricardoV94 in https://github.com/pymc-devs/pymc/pull/7379

New Contributors

• @hevansDev made their first contribution in https://github.com/pymc-devs/pymc/pull/7356
• @kiramclean made their first contribution in https://github.com/pymc-devs/pymc/pull/7358
• @bomtall made their first contribution in https://github.com/pymc-devs/pymc/pull/7357
• @alimanfoo made their first contribution in https://github.com/pymc-devs/pymc/pull/7361
• @osyuksel made their first contribution in https://github.com/pymc-devs/pymc/pull/7360
• @markgreene74 made their first contribution in https://github.com/pymc-devs/pymc/pull/7363

Full Changelog: https://github.com/pymc-devs/pymc/compare/v5.15.1...v5.16.0