Introduction to bulk RNAseq analysis: supplementary material
Contributors
- 1. Center for Health Data Science, University of Copenhagen
- 2. reNEW NNF Center for Stem Cell Medicine, Labs and Platforms
Description
Vampirium setup
This archive contains materials (datasets, exercises and slides, etc) used for the Introduction to bulk RNAseq analysis workshop taught at the University of Copenhagen by the Center for Health Data Science (HeaDS). The course repo can be found on Github:
Assignments.zip contains exercises for the preprocessing part of the course, like fastqc and multiqc examples of bulk RNAseq experiments
Data.zip contains count matrices (both traditional counts and salmon pseudocounts), as well as sample metadata (samplesheet.csv) and backup results from the preprocessing pipeline.
Notes.zip contains supplementary materials such as extra pdfs for more information on bulk RNAseq technology.
Slides.zip contains all the slides used in the workshop.
raw_reads.zip contains the raw reads from the bulk RNAseq experiment (10.1016/j.celrep.2014.10.054) used in this course.
Files
Assignments.zip
Files
(26.2 GB)
| Name | Size | Download all |
|---|---|---|
|
md5:37e4e8dde06c93411a15b91abc005e36
|
2.9 MB | Preview Download |
|
md5:dc4b65b5c13f97add58335420850bd92
|
38.8 MB | Preview Download |
|
md5:bbd70fb9d879db31273fea3169ef1c15
|
7.4 MB | Preview Download |
|
md5:4ab492b7daa96d4993b4708bc798fafc
|
26.0 GB | Preview Download |
|
md5:be5ee175800428f4ac6965469f4462c2
|
181.7 MB | Preview Download |
Additional details
Related works
- Is supplement to
- Lesson: 10.5281/zenodo.10075340 (DOI)
Dates
- Updated
-
2024-06-17slides updates
References
- Kenny PJ, Zhou H, Kim M, Skariah G, Khetani RS, Drnevich J, Arcila ML, Kosik KS, Ceman S. MOV10 and FMRP regulate AGO2 association with microRNA recognition elements. Cell Rep. 2014 Dec 11;9(5):1729-1741. doi: 10.1016/j.celrep.2014.10.054. Epub 2014 Nov 20. PMID: 25464849; PMCID: PMC4268400.