HegemanLab/w4mkmeans_galaxy_wrapper: w4mkmeans - A K-means cluster tool for W4m

w4mkmeans is a Planemo-built galaxy-tool-wrapper to wrap the stats::kmeans R package for clustering the dataMatrix produced by workflow4metabolomics (W4m) XCMS and CAMERA tools.

Using the intensities in the dataMatrix, w4mkmeans calculates the k-means clusters for samples or features and add them as columns to sampleMetadata or featureMetadata, respectively.

• If several, comma-separated K's are supplied, then one column is added for each K.
• Clustering is mutually exclusive, not hierarchical.
• For feature-clustering, each feature is assigned to a cluster such that the feature's response for all samples is closer to the mean of all features for that cluster than to the mean for any other cluster.
• For sample-clustering, each sample is assigned to a cluster such that the sample's response for all features is closer to the mean of all samples for that cluster than to the mean for any other cluster.