Published June 16, 2024
| Version v0.25.2
Software
Open
AMICI: High-Performance Sensitivity Analysis for Large Ordinary Differential Equation Models
Description
Fixes
- Fixed a bug in PEtab import which led to incorrect gradients
w.r.t. estimated initial values specified via the condition table
BREAKING CHANGE:
amici.petab.sbml_import.{import_model_sbml,import_model}no longer supports passing individual PEtab tables, but only the PEtab problem object. This functionality was deprecated since v0.12.0 (2022-08-26). - Fixes for numpy 2.0 compatibility
NOTE: As long as some amici dependencies don't support numpy 2.0 yet,
you may need to pin numpy to <2.0 in your requirements
(
pip install amici "numpy<2.0").
Full Changelog: https://github.com/AMICI-dev/AMICI/compare/v0.25.1...v0.25.2
Notes
If you use this software, please cite both the article from preferred-citation and the software itself.
Files
AMICI-dev/AMICI-v0.25.2.zip
Files
(7.1 MB)
| Name | Size | Download all |
|---|---|---|
|
md5:beb2c4fb96c2d0d998e537860f9577f8
|
7.1 MB | Preview Download |
Additional details
Related works
- Is supplement to
- Software: https://github.com/AMICI-dev/AMICI/tree/v0.25.2 (URL)