Published February 27, 2018 | Version v1.6.16
Software Open

mskcc/vcf2maf: vcf2maf v1.6.16

Creators

  • 1. Memorial Sloan Kettering Cancer Center
  • 2. MSKCC
  • 3. OHSU
  • 4. @mskcc

Description

  • Support for newest VEP (v91), while remaining compatible with older VEP (v88 or older).
  • vcf2maf/maf2maf now report gnomAD AFs.
  • HGVS_Short will now use = for silent muts. E.g. p.T125= instead of p.T125T.
  • Option to disable common_variant tagging: Set --filter-vcf 0 in vcf2maf/maf2maf.
  • vcf2maf will no longer annotate ALTs seen in normal GT.
  • maf2vcf handles multiallelic sites better.
  • maf2vcf generates VCFs that should pass the EBI validator.

Files

mskcc/vcf2maf-v1.6.16.zip

Files (5.3 MB)

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md5:1d7b10710ad9ab25ad1126ba27eddfb3
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Additional details

Related works

Is supplement to
https://github.com/mskcc/vcf2maf/tree/v1.6.16 (URL)