Published December 11, 2017
| Version v2
Dataset
Open
Taxon sampling and inferred community phylogenies: R replication code and data.
Authors/Creators
- 1. Harvard University
- 2. Sichuan University
Description
1 ) Code for simulating community phylogenies:
community_simulations_creation.R
[taxon].gene
[taxon].phy
[taxon].RAxML_bestTree.tre
[taxon].Simulate.A.Community.pl
[taxon].Simulate.B.Community.pl
[taxon].Simulate.C.Community.pl
[taxon].Simulate.D.Community.pl
2) R code for creating and comparing phylogenetic diversity metrics:
simulated_metric_calculation_and_comparison.R
empirical_metric_calculation_and_comparison.R
3) R code and data for statistical analyses:
simulated_data_analysis.R
empirical_data_analysis.R
simulated_interval_individual_lme_data.csv
simulated_summary_interval_individual_lme_data.csv
empirical_interval_individual_lme_data.csv
empirical_summary_interval_lme_data.csv
Files
empirical_interval_individual_lme_data.csv
Files
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