Pyrokinetics - A Python library to standardise gyrokinetic analysis

What's Changed

• Minor JOSS edits by @LiamPattinson in https://github.com/pyro-kinetics/pyrokinetics/pull/248
• JOSS Paper by @bpatel2107 in https://github.com/pyro-kinetics/pyrokinetics/pull/229
• Replace "parameters" with "knobs" in GS2 by @d7919 in https://github.com/pyro-kinetics/pyrokinetics/pull/297
• Fix beta setting when directly specifying code by @bpatel2107 in https://github.com/pyro-kinetics/pyrokinetics/pull/299
• method to check quasi-neutrality on density gradients by @arkabokshi in https://github.com/pyro-kinetics/pyrokinetics/pull/302
• Update normalisation.py to allow for the conversion of original base … by @bpatel2107 in https://github.com/pyro-kinetics/pyrokinetics/pull/303
• fix if statement by @arkabokshi in https://github.com/pyro-kinetics/pyrokinetics/pull/304
• Modified the kperp diagnostic to work on any nperiod by @whornsby82 in https://github.com/pyro-kinetics/pyrokinetics/pull/306
• Nl documentation by @dake0795 in https://github.com/pyro-kinetics/pyrokinetics/pull/223
• Enhancements/merge species by @arkabokshi in https://github.com/pyro-kinetics/pyrokinetics/pull/296
• Write bespoke GACODE reader to avoid pygacode import by @bpatel2107 in https://github.com/pyro-kinetics/pyrokinetics/pull/307
• Make more useful missing file error JETTO kinetics by @bpatel2107 in https://github.com/pyro-kinetics/pyrokinetics/pull/313
• Fix NaN check for arrays and normalise to final finite timeslice in f… by @bpatel2107 in https://github.com/pyro-kinetics/pyrokinetics/pull/309
• Set qref to pint elementary_charge and mref to scipy constant in uni… by @bpatel2107 in https://github.com/pyro-kinetics/pyrokinetics/pull/318
• Add tutorial for using Pyrokinetics on HPC systems by @LiamPattinson in https://github.com/pyro-kinetics/pyrokinetics/pull/314
• Enhancements/auto detect normalisations by @bpatel2107 in https://github.com/pyro-kinetics/pyrokinetics/pull/311
• Check if LocalGeometry has pressure and set accordingly. Remove unnec… by @bpatel2107 in https://github.com/pyro-kinetics/pyrokinetics/pull/323
• Load in tracer_efit as "circular" LocalGeometry with q and shat by @bpatel2107 in https://github.com/pyro-kinetics/pyrokinetics/pull/319
• Cache file reads in tests by @LiamPattinson in https://github.com/pyro-kinetics/pyrokinetics/pull/327
• Bugfix: Slow deepcopies in tests by @LiamPattinson in https://github.com/pyro-kinetics/pyrokinetics/pull/328
• Enhancements/add gkw v2 by @bpatel2107 in https://github.com/pyro-kinetics/pyrokinetics/pull/325
• Bugfix/eigenvalues units by @bpatel2107 in https://github.com/pyro-kinetics/pyrokinetics/pull/332
• Replace setuptools-scm with versioningit, store __commit__ alongside __version__ by @LiamPattinson in https://github.com/pyro-kinetics/pyrokinetics/pull/331
• update how ions are named by @arkabokshi in https://github.com/pyro-kinetics/pyrokinetics/pull/315
• Enhancements/imas update v3.4 by @bpatel2107 in https://github.com/pyro-kinetics/pyrokinetics/pull/301
• Bugfix/gene dpdx pm sign by @bpatel2107 in https://github.com/pyro-kinetics/pyrokinetics/pull/339
• Add MXH to GENE by @bpatel2107 in https://github.com/pyro-kinetics/pyrokinetics/pull/329
• Definition of inverse_lp was reverted accidentally when adding GKW. T… by @bpatel2107 in https://github.com/pyro-kinetics/pyrokinetics/pull/342
• GK code stella input file conversion feature by @mrhardman in https://github.com/pyro-kinetics/pyrokinetics/pull/338
• Drop units in directory name when making Pyroscan with pint Quantity by @bpatel2107 in https://github.com/pyro-kinetics/pyrokinetics/pull/347
• Update bunit calculation to use analytic solution by @bpatel2107 in https://github.com/pyro-kinetics/pyrokinetics/pull/346
• Add in reader for nrg in h5 format by @bpatel2107 in https://github.com/pyro-kinetics/pyrokinetics/pull/343
• Update publishing workflow by @LiamPattinson in https://github.com/pyro-kinetics/pyrokinetics/pull/340
• Bugfix/eigenfunction amp by @bpatel2107 in https://github.com/pyro-kinetics/pyrokinetics/pull/341
• Set up reading ky from n0 in gs2 input file by @bpatel2107 in https://github.com/pyro-kinetics/pyrokinetics/pull/324
• Add correct mass factor in rhoref scaling by @bpatel2107 in https://github.com/pyro-kinetics/pyrokinetics/pull/348
• Update README.md by @bpatel2107 in https://github.com/pyro-kinetics/pyrokinetics/pull/350
• wip: highk/dbs synthetic diagnostic by @juanruizruiz in https://github.com/pyro-kinetics/pyrokinetics/pull/294
• Use correct variable for fast ion nucleon by @bpatel2107 in https://github.com/pyro-kinetics/pyrokinetics/pull/355
• Bugfix: unit conversions using simulation units by @LiamPattinson in https://github.com/pyro-kinetics/pyrokinetics/pull/357
• Bugfix: Pin idspy-dictionaries version by @LiamPattinson in https://github.com/pyro-kinetics/pyrokinetics/pull/358
• Feature/gene trpeps geometry file by @bpatel2107 in https://github.com/pyro-kinetics/pyrokinetics/pull/359
• Unpin scipy by @ZedThree in https://github.com/pyro-kinetics/pyrokinetics/pull/345

New Contributors

• @whornsby82 made their first contribution in https://github.com/pyro-kinetics/pyrokinetics/pull/306
• @mrhardman made their first contribution in https://github.com/pyro-kinetics/pyrokinetics/pull/338
• @juanruizruiz made their first contribution in https://github.com/pyro-kinetics/pyrokinetics/pull/294

Full Changelog: https://github.com/pyro-kinetics/pyrokinetics/compare/v0.6.1...v0.7.0