Published June 30, 2024 | Version v1
Thesis Open

Modeling Protein-Nucleic Acid Interactions

Authors/Creators

  • 1. ROR icon University of Florida

Description

There are three files in this repository which comprise the supplementary material to chapters 2, 3 and 4 of my PhD thesis. These are being re-published with permission from respective journals according to the references.

Files

02 - Searching for Low Probability Opening Events in a DNA Sliding Clamp.pdf

Files (8.0 MB)

Additional details

Dates

Copyrighted
2019-08/2024-06

References

  • Reza Esmaeeli, Benedict Andal, and Alberto Perez. Searching for low probability opening events in a dna sliding clamp. Life, 12(2):261, February 2022
  • Reza Esmaeeli, Antonio Bauza ́, and Alberto Perez. Structural predictions of protein-dna binding: Meld-dna. Nucleic Acids Research, 51(4):1625–1636, February 2023.
  • Reza Esmaeeli, Mar ́ıa de las Nieves Pin ̃a, Antonio Frontera, Alberto Pe ́rez, and Antonio Bauza ́. Importance of anion-pi interactions in rna gaaa and ggag tetraloops: A combined md and qm study. Journal of Chemical Theory and Computation, 17(10):6624–6633, September 2021.