There is a newer version of the record available.

Published January 18, 2018 | Version 1.2.5
Software Open

SciLifeLab/CAW 1.2.5

Authors/Creators

  • 1. SciLifeLab
  • 2. @SciLifeLab | Karolinska Institutet
  • 3. Comparative Bioinformatics, CRG
  • 4. NBIS
  • 5. Science for Life Laboratory
  • 6. Rally Software

Description

  • Fixed version of COSMIC GRCh37 v83
  • Add delivery README
  • Write an error message when --sampleDir does not find any FASTQ files
  • Document use of the --sampleDir option
  • Add CAW Contributing Guidelines
  • Add Issue Templates
  • Add Release Checklist
  • Update Nextflow to 0.26.0 (new fancy report + AWS Batch)
  • Add extra time on Travis CI testing
  • Replace bundleDir by params.genome_base
  • Update MultiQC to 1.3 (MEGAQC FTW)
  • Add --outDir
  • Add base.config for ConcatVCF process
  • Add awsbatch profile
  • Add aws-batch.config config file
  • Move and rename some test files
  • Add new --noBAMQC params (failing in AWS Batch, and sometimes on Bianca)
  • Fix file specification for recalibrationReport in RecalibrateBam process (got error on AWS Batch)

Files

SciLifeLab/CAW-1.2.5.zip

Files (17.4 MB)

Name Size Download all
md5:491745b3fcc9761778ad49d5c905982c
17.4 MB Preview Download

Additional details

Related works

Is supplement to
https://github.com/SciLifeLab/CAW/tree/1.2.5 (URL)