Published June 19, 2024 | Version v1
Dataset Open

Design of linear and cyclic peptide binders

Description

The data is compressed with zstd: https://github.com/facebook/zstd and tar. To uncompress do: 

tar --use-compress-program full/path/to/zstd -xvf file.tar.zst

PDB files of predicted protein-peptide complexes from the design process:

1.1G    1ssc_untargeted_cyclic_afm.tar.zst
1.1G    1ssc_untargeted_cyclic.tar.zst
1.1G    1ssc_untargeted_linear_afm.tar.zst
1.1G    1ssc_untargeted_linear.tar.zst

Selected PDB files of predicted protein-peptide complexes from the design process:

(440 KB each). 1ssc_adversarial_linear_sel, 1ssc_tp_cyclic_sel, 1ssc_tp_linear_sel

Metrics:

1ssc_cyclic_merged_with_solubility.csv  - all cyclic design metriccs

1ssc_linear_merged_with_solubility.csv - all linear design metriccs

1ssc_linear_adversarial_sel.csv - adversarial selection for linear design

1ssc_linear_tp_sel.csv - top selection for linear design

linear_spr_results_summary.csv - SPR affinities for linear top and adversarial selection (Kd)

1ssc_cyclic_tp_sel.csv - top selection for cyclic design

Files

1ssc_cyclic_merged_with_solubility.csv

Files (4.4 GB)

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md5:bb27c1afbb5c785e33e32c44b52d36ba
448.5 kB Download
md5:a54f64918b22e3ff1a8b4ea0ba1b0901
9.5 MB Preview Download
md5:16fdd08a01d0bb52cd7be144fc90883b
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md5:96736ba94f06aa09905f7fa9403e9948
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md5:d64a222cb84f620ca4f0e26e945b01b8
448.7 kB Download
md5:28a3e963523f893b5413709f9a16741e
1.1 GB Download
md5:616961ffe5299712899e50874405f838
1.1 GB Download
md5:b064744499b73b9ed4c5ccaf73f7753e
1.1 GB Download
md5:50627066584cc1d62eeef0a6a6f6d7a8
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md5:966babb6183bc22c37c76267814f32c1
670 Bytes Preview Download