Published May 30, 2024
| Version v1
Model
Open
The trained models of "CellContrast: Reconstructing Spatial Relationships in Single-Cell RNA Sequencing Data via Deep Contrastive Learning"
Creators
Description
- 10X_visium_human_breast_epoch_3000.pt: the trained model with a 10X Visium human breast sample.
- MERSCOPE_epoch_3000.pt: the trained model with a MERSCOPE mouse brain sample.
- 10X_visium_human_lung_epoch_3000.pt: the trained model with a 10X Visium human lung sample.
- SeqFISH_mouse_embryo_E8.5_epoch_3000.pt: the trained model with a SeqFISH mouse embryo sample (E1L1).
- SeqFISH_mouse_embryo_E8.5_multiple_ST_epoch_3000.pt: the trained model with 3 SeqFISH mouse embryo samples (L1 of E1,2,3),
- StereoSeq_mouse_embryo_E9.5_epoch_3000.pt: the trained model with a StereoSeq mouse embryo sample.
Files
Files
(444.3 MB)
| Name | Size | Download all |
|---|---|---|
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md5:0a1ff6c0b79a60de79e40ead7ef2caaa
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305.5 MB | Download |
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md5:baa710b073df759a3cc821a15bdd3988
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102.6 MB | Download |
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md5:ad8ab6f18ff63a6cfdc7cfddf2923b4d
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10.9 MB | Download |
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md5:e3405134359a5cfd2fd88d3d2df5280a
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8.4 MB | Download |
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md5:158c422e43a7b5117955ec394a160fbe
|
8.4 MB | Download |
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md5:728c403a8c7dfd8aea49fd136b6d6cf5
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8.4 MB | Download |
Additional details
Software
- Repository URL
- https://github.com/HKU-BAL/CellContrast/
- Programming language
- Python
- Development Status
- Active