Published May 24, 2024 | Version 0.01
Software Open

All-in-One tool for Analyzing Nuclei in Multicellular Spheroids

  • 1. ROR icon Democritus University of Thrace

Description

 An All-In-One tool for the analysis of Nuclei in multi-dimensional, fluorescence microscopy data sets

The tool will contain:
-GUI for setting segmentation parameters
-GUI for settings tracking parameters
-GUI for visualizing tracking results
-GUI for annotating nuclei centroids for validation metrics and ML models
-GUI for training ML models to classify nuclei according to cell cycle phase
-GUI for correcting Automatic segmentation results and create GT mask for training DL models
-GUI for creating DL models to segment Nuclei
-GUI for creating 4D videos for visualization

Files

3D_segmentation_tool.zip

Files (103.7 MB)

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md5:de324e9fd14fda5fe743d9b06258665e
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Additional details

Software

Repository URL
https://github.com/sdidaska
Programming language
MATLAB