Hepatocyte-macrophage interaction in hepatic inflammation triggered by ADAR1 deficiency

This archive contains scripts for the computational analyses performed for this paper.

File information:

• Analyze mouse scRNAseq datasets.R: Script for analyzing mouse single cell RNA-Seq data

• Cellular communiations using modified nichenetr.R: NicheNet script for cell-cell communication analysis for mouse single cell RNA-Seq data

• RNA velocity of only Hepatocyte.ipynb: Python script for RNA velocity analysis for mouse single cell RNA-Seq data

• Spatial transcriptomic analysis using CellTrek.R: Script for annotating mouse spatial transcriptomic data with CellTrek

• Analyze human scRNAseq datasets.R: Script for analyzing human single cell RNA-Seq data