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Published September 28, 2023 | Version v1
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Figure 2 in Integrative taxonomy reveals unrecognised species diversity in African Corypha larks (Aves: Alaudidae)

Authors/Creators

  • 1. Animal Ecology, Department of Ecology and Genetics, Evolutionary Biology Centre, Uppsala University, Norbyvägen 18D, 752 36 Uppsala, Sweden & Key Laboratory of Zoological Systematics and Evolution, Institute of Zoology, Chinese Academy of Sciences, Beijing 100101, Chinaa
  • 2. Department of Biology, Faculty of Sciences, Golestan University, Gorgan, Iran
  • 3. BirdLife International, The David Attenborough Building, Pembroke Street, Cambridge CB2 3QZ, UK & Department of Zoology, University of Cambridge, Downing Street, Cambridge CB2 3EJ, UK
  • 4. Animal Ecology, Department of Ecology and Genetics, Evolutionary Biology Centre, Uppsala University, Norbyvägen 18D, 752 36 Uppsala, Sweden
  • 5. Department of Medical Biochemistry and Microbiology, Uppsala University, 751 23 Uppsala, Sweden & Department of Biomolecular Engineering, University of California, Santa Cruz, Santa Cruz, CA 95060, USA
  • 6. Department of Bioinformatics and Genetics, Swedish Museum of Natural History, PO Box 50007, 104 05 Stockholm, Sweden
  • 7. Nigerian Montane Forest Project (NMPF), Ngel Nyaki Forest Reserve, Mambilla Plateau, Taraba State, Nigeria & A.P. Leventis Ornithological Research Institute (APLORI), Biological Conservatory, Jos-East, Plateau State, Nigeria
  • 8. Department of Zoology, Ornithology Section, National Museums of Kenya, PO Box 40658-00100 GPO, Nairobi, Kenya
  • 9. Groningen Institute for Evolutionary Life Sciences, University of Groningen, Nijenborgh 7, 9747 AG Groningen, The Netherlands
  • 10. Department of Biodiversity, University of Limpopo, Private Bag X1106, Sovenga, 0727, South Africa
  • 11. Department of Biological and Environmental Sciences, University of Gothenburg, PO Box 463, 405 30 Göteborg, Sweden & Gothenburg Global Biodiversity Centre, PO Box 461, 405 30 Göteborg, Sweden
  • 12. Bird Group, Natural History Museum, Akeman Street, Tring, Hertfordshire HP23 6AP, UK & Present address: Department of Natural Sciences, National Museums Scotland, Chambers Street, Edinburgh EH1 1JF, UK

Description

Figure 2. Phylogenies of the Corypha africana–C. sharpii–C. hypermetra–C. somalica–C. ashi complex, with Corypha fasciolata as the outgroup (the more distant outgroup species Amirafra rufocinnamomea has been removed) based on the multi-species coalescent, produced within a Bayesian framework in SNAPP on 16,412 single nucleotide polymorphisms (SNPs) and single individuals per taxon (A) and with ASTRAL, summarising taxon quartets in maximum likelihood (ML) analyses of 32,000 SNPs across 626 unlinked windows for all samples (B). Node support values are posterior probabilities (PPs) for SNAPP and local PPs for ASTRAL, with an asterisk indicating a PP of 1.00. Clades that are discussed in the text are labelled I–VIII and with the name of the taxon that has priority in the respective clade. The names of C. africana s.l. are in black font; the other species are in other colours. Topological incongruence between these two trees, the Snapper species tree (Supporting Information, Fig. S3), the ML IQ-TREE tree (Supporting Information, Fig. S5) and/or the Bayesian multilocus tree (Fig. 3) are indicated by a red '#'.

Notes

Published as part of Alström, Per, Mohammadi, Zeinolabedin, Donald, Paul F., Nymark, Marianne, Enbody, Erik D., Irestedt, Martin, Elisha, Emmanuel Barde, Ndithia, Henry K., Tieleman, B. Irene, Engelbrecht, Derek, Olsson, Urban, Rancilhac, Loïs & Stervander, Martin, 2024, Integrative taxonomy reveals unrecognised species diversity in African Corypha larks (Aves: Alaudidae), pp. 1080-1108 in Zoological Journal of the Linnean Society 200 (4) on page 1090, DOI: 10.1093/zoolinnean/zlad107, http://zenodo.org/record/11240858

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Journal article: 10.1093/zoolinnean/zlad107 (DOI)
Journal article: urn:lsid:plazi.org:pub:E930A535FFFBFFF39E6EFFAEED708D0B (LSID)
Journal article: https://zenodo.org/record/11240858 (URL)