segmentation results and ground truth for ComSeg benchmark

This folder displays segmentation results and ground truth cell masks used in the benchmark of the paper: A point cloud segmentation framework for image-based spatial transcriptomics, Defard et al. 

The mouse iluem dataset raw images can be downloaded from the study  :  Petukhov, V., Xu, R.J., Soldatov, R.A. et al. Cell segmentation in imaging-based spatial transcriptomics. Nat Biotechnol 40, 345–354 (2022). https://doi.org/10.1038/s41587-021-01044-w

the Vizgen MERFISH breast cancer dataset  was sampled from  MERSCOPE FFPE Human Immuno-oncology, https://vizgen.com/data-release-program/ : Breast cancer