Published May 21, 2024 | Version v1
Dataset Open

PSCP Data and Results for PIPPack

  • 1. ROR icon University of North Carolina at Chapel Hill

Description

Evaluation datasets and results for the protein side chain packing (PSCP) task from PIPPack: https://www.biorxiv.org/content/10.1101/2023.08.03.551328v2.

This repository contains the CASP13, CASP14, CASP15, CASP15+context, and Top2018 test sets created as described in the PIPPack paper. The native, ground-truth structures are found in the "native" subdirectory; other subdirectories contain predictions made by PSCP methods. Subdirectories also contain some statistics and results in the form of .txt files. 

The CASP15+context results make use of an additional Python script (PIPPack/data/extract_targets_from_full_targets.py) found in the PIPPack GitHub repository (https://github.com/Kuhlman-Lab/PIPPack).

Citing this work: If you choose to use any of these datasets or results for your own research, please cite this repository and the PIPPack paper: https://www.biorxiv.org/content/10.1101/2023.08.03.551328v2.

Files

pippack_pscp_results.zip

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Additional details

Dates

Created
2024-05-21
Created repository

Software

Repository URL
https://github.com/Kuhlman-Lab/PIPPack
Programming language
Python
Development Status
Active