Published May 17, 2024
| Version v1.1.0
Software
Open
skDER
Authors/Creators
Description
- Introduce ability to specify GTDB release and update to using GTDB R220 as default for when users request to auto-download and include all genomes from a particular genus/species.
- Remove need for symlinking genomes locally, instead fastx index files are now written in the same folder as the input genomes and deleted afterwards.
- Parallelization when computing N50 is done by splitting up number of genomes by the number of CPUs allocated and thus writing to at most X number of files at a time, where X is the number of CPUs. This is to address: https://github.com/raufs/skDER/issues/4
Files
raufs/skDER-v1.1.0.zip
Files
(7.9 MB)
| Name | Size | Download all |
|---|---|---|
|
md5:277d8b4d0915f8f4114d9d27fae88f72
|
7.9 MB | Preview Download |
Additional details
Related works
- Is supplement to
- Software: https://github.com/raufs/skDER/tree/v1.1.0 (URL)