Published May 14, 2024
| Version v1.4.0
Software
Open
zol
Authors/Creators
Description
- Correct fai cutoff for minimum proportion of distinct query genes to properly account for the occurrence of intermediate/background genes. The calculation reported in spreadsheets was not affected.
- Set default syntenic correlation threshold to 0.0 (off) from previous default of 0.6.
- Update prepTG to reference data from GTDB R220 and allow users the option to choose GTDB release (>= R214 supported).
- Update splitting of DIAMOND alignment in zol to allow for parallelization.
- Introduce CD-HIT protein clustering option/mode instead of the default InParanoid-like approach.
- Add option to control re-inflation CD-HIT parameters.
- New scripts and tutorial on using fast.genomics and CAGECAT to get sets of homologous gene clusters to investigate in zol.
Notes
If you use this software, please cite the zol preprint/manuscript.
Files
Kalan-Lab/zol-v1.4.0.zip
Files
(22.8 MB)
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md5:fd380797418201b05401f663000e38e5
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Additional details
Related works
- Is supplement to
- Software: https://github.com/Kalan-Lab/zol/tree/v1.4.0 (URL)