Published May 25, 2024
| Version v1.0.0
Software
Open
BIgMAG: Board InteGrating Metagenome-Assembled Genomes quality metrics
-
1.
University of Fribourg
- 2. Swiss Institute of Bioinformatics
Description
BIgMAG (Board InteGrating Metagenome-Assembled Genomes) is a dashboard to display multiple metagenome quality metrics and taxonomical annotation from several tools using the unique file generated by MAGFlow.
Files
Files
(218.0 kB)
| Name | Size | Download all |
|---|---|---|
|
md5:21bba0702cb384d3a4c23ca815812b84
|
218.0 kB | Download |
Additional details
Related works
- Documents
- Dataset: 10.5281/zenodo.11003957 (DOI)
- Requires
- Software: 10.5281/zenodo.11178032 (DOI)
Dates
- Available
-
2024-05-25
Software
- Repository URL
- https://github.com/jeffe107/BIgMAG
- Programming language
- Python
- Development Status
- Active
References
- Chklovski, A., Parks, D. H., Woodcroft, B. J., & Tyson, G. W. (2023). CheckM2: a rapid, scalable and accurate tool for assessing microbial genome quality using machine learning. Nature Methods, 20(8), 1203–1212.
- Chaumeil, P.-A., Mussig, A. J., Hugenholtz, P., & Parks, D. H. (2022). GTDB-Tk v2: memory friendly classification with the genome taxonomy database. Bioinformatics, 38(23), 5315–5316.
- Gurevich, A., Saveliev, V., Vyahhi, N., & Tesler, G. (2013). QUAST: quality assessment tool for genome assemblies. Bioinformatics, 29(8), 1072–1075.
- Manni, M., Berkeley, M. R., Seppey, M., & Zdobnov, E. M. (2021). BUSCO: Assessing Genomic Data Quality and Beyond. Current Protocols, 1(12), e323.
- Orakov, A., Fullam, A., Coelho, L. P., Khedkar, S., Szklarczyk, D., Mende, D. R., Schmidt, T. S. B., & Bork, P. (2021). GUNC: detection of chimerism and contamination in prokaryotic genomes. Genome Biology, 22(1), 1–19.