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Published December 16, 2017 | Version v1.6.15
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mskcc/vcf2maf: vcf2maf v1.6.15

Authors/Creators

  • 1. Memorial Sloan Kettering Cancer Center
  • 2. MSKCC
  • 3. OHSU
  • 4. @mskcc

Description

  • vcf2maf now supports Delly VCFs, producing MAFs with fields needed by cBioPortal.
  • Fix: Remove INFO/SVTYPE when ALT is defined (e.g. Pindel), or else VEP skips transcript-level effect.
  • Using --remap-chain now retains original loci in a column named REMAPPED_POS.
  • New chain files added for GRCh38_to_GRCh37 and GRCm38_to_NCBIM37.
  • New unit tests added in 09625cb with tricky to annotate events.

Files

mskcc/vcf2maf-v1.6.15.zip

Files (5.3 MB)

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md5:542e56dd6475d86b18cbb10cbaffff06
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Additional details

Related works

Is supplement to
https://github.com/mskcc/vcf2maf/tree/v1.6.15 (URL)