Published April 24, 2026 | Version v1.2.2
Software Open

BacFlux: A workflow for bacterial short-read assembly, QC, annotation, and more, with support for pre-assembled contigs

Authors/Creators

  • 1. AIT Austrian Institute of Technology

Description

BacFlux v1.2.2

April 2026

This release improves robustness of the BacFlux and FastaFlux workflows, with particular attention to database handling, Bakta compatibility, and cleanup of workflow outputs.

Highlights

  • Updated BacFlux and FastaFlux metadata to v1.2.2.
  • Improved CheckV database handling for viral sequence quality assessment.
  • Added safer Bakta locus tag generation to avoid invalid sample-derived locus tags.
  • Added diamond to the Bakta Conda environment.
  • Improved dbCAN database handling in FastaFlux with checksum/sentinel-based validation.
  • Extended clean_workdir.sh so it supports both BacFlux and FastaFlux output directory layouts.
  • Fixed minor wording and log-name issues in the workflow.

Files

iLivius/BacFlux-v1.2.2.zip

Files (175.7 kB)

Name Size Download all
md5:4749b1ac3e7b22e40bd3b504abb91006
175.7 kB Preview Download

Additional details

Related works

Is supplement to
Software: https://github.com/iLivius/BacFlux/tree/v1.2.2 (URL)

Software

Repository URL
https://github.com/iLivius/BacFlux