Published May 6, 2024 | Version v2
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On the role of native contact cooperativity in protein folding

Authors/Creators

  • 1. ROR icon National Institutes of Health
  • 2. ROR icon Johns Hopkins University
  • 3. ROR icon Brandeis University
  • 4. ROR icon National Institute of Health

Description

This repository provides supporting information related to the paper "On the role of contact cooperativity in protein folding" by Wang, Frechette and Best ( https://doi.org/10.1073/pnas.2319249121 ) and contains: 

  1. C++ code using Boltzmann machines to learn the parameters of an Ising model that best describes contact formation observed in an MD simulation. 
  2. The fitted parameters and python scripts used for plotting several of the figures in the paper.

Files

parameters_figs.zip

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