aicjanelia/LLSM: LLSM and MOSAIC Image Processing Pipeline

Hobson, Chad; Kawase, Takashi; Lee, Rachel; Puls, Owen; Rossetti, Blair; Wait, Eric

doi:10.5281/zenodo.11106928

Published May 2, 2024 | Version v1.0

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aicjanelia/LLSM: LLSM and MOSAIC Image Processing Pipeline

1. Advanced Imaging Center, Howard Hughes Medical Institute Janelia Research Campus
2. Scientific Computing Software, Howard Hughes Medical Institute Janelia Research Campus

Pipeline for cropping, deskewing, deconvolving, and/or creating maximum intensity projections of the data taken by visitors to the Advanced Imaging Center (AIC) using the Lattice Light Sheet Microscope (LLSM) and Multimodal Optical Scope with Adaptive Imaging Correction (MOSAIC).

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aicjanelia/LLSM-v1.0.zip

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Is supplement to: Software: https://github.com/aicjanelia/LLSM/tree/v1.0 (URL)

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Zenodo

License: BSD-3-Clause license

Copyright © 2024 Howard Hughes Medical Institute Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met: • Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer. • Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution. • Neither the name of HHMI nor the names of its contributors may be used to endorse or promote products derived from this software without specific prior written permission. THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS “AS IS” AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. Read more

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Created: May 2, 2024
Modified: May 2, 2024

aicjanelia/LLSM: LLSM and MOSAIC Image Processing Pipeline

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aicjanelia/LLSM-v1.0.zip

Files (84.7 kB)

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