Transcription start site analysis for heterogenous CD4+ T cells using 5′ scRNA-seq
Authors/Creators
- 1. RIKEN Center for Integrative Medical Sciences
Description
These datasets are generated by ReapTEC (read-level pre-filtering and transcribed enhancer call) using 5' single-cell RNA-seq data on human heterogenous CD4+ T cells. By taking advantage of a unique "cap signature" derived from the 5′-end of a transcript, ReapTEC simultaneously profiles gene expression and enhancer activity at nucleotide resolution using 5′-end single-cell RNA-sequencing (5′ scRNA-seq). The detail of ReapTEC pipeline is described in https://github.com/MurakawaLab/ReapTEC.
Notes
Funding provided by: Japan Agency for Medical Research and Development
Crossref Funder Registry ID: https://ror.org/004rtk039
Award Number:
Funding provided by: Japan Society for the Promotion of Science
Crossref Funder Registry ID: https://ror.org/00hhkn466
Award Number:
Funding provided by: Japan Science and Technology Agency
Crossref Funder Registry ID: https://ror.org/00097mb19
Award Number:
Files
5scCTSSbed_All.zip
Files
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Additional details
Related works
- Is derived from
- https://github.com/MurakawaLab/ReapTEC (URL)