Published April 19, 2024 | Version v1
Dataset Open

Data for Sampling Real‐Time Atomic Dynamics in Metal Nanoparticles by Combining Experiments, Simulations, and Machine Learning

  • 1. Politecnico di Torino
  • 2. Scuola universitaria professionale della Svizzera italiana Dipartimento tecnologie innovative
  • 3. ROR icon University of Antwerp

Description

Even at low temperatures, metal nanoparticles (NPs) possess atomic dynamics that are key for their properties but challenging to elucidate. Recent experimental advances allow obtaining atomic‐resolution snapshots of the NPs in realistic regimes, but data acquisition limitations hinder the experimental reconstruction of the atomic dynamics present within them. Molecular simulations have the advantage that these allow directly tracking the motion of atoms over time. However, these typically start from ideal/perfect NP structures and, suffering from sampling limits, provide results that are often dependent on the initial/putative structure and remain purely indicative. Here, by combining state‐of‐the‐art experimental and computational approaches, how it is possible to tackle the limitations of both approaches and resolve the atomistic dynamics present in metal NPs in realistic conditions is demonstrated. Annular dark‐field scanning transmission electron microscopy enables the acquisition of ten high‐resolution images of an Au NP at intervals of 0.6 s. These are used to reconstruct atomistic 3D models of the real NP used to run ten independent molecular dynamics simulations. Machine learning analyses of the simulation trajectories allows resolving the real‐time atomic dynamics present within the NP. This provides a robust combined experimental/computational approach to characterize the structural dynamics of metal NPs in realistic conditions.

Files

AuNP.zip

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Additional details

Funding

European Commission
DYNAPOL – Modeling approaches toward bioinspired dynamic materials 818776
European Commission
REALNANO – 3D Structure of Nanomaterials under Realistic Conditions 815128
European Commission
PICOMETRICS – Picometer metrology for light-element nanostructures: making every electron count 770887

Software

Repository URL
https://github.com/GMPavanLab/AuNP
Programming language
Python
Development Status
Active