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Published April 12, 2024 | Version 0.8e
Software Open

PombertLab/SYNY: SYNY-v0.8e

Authors/Creators

  • 1. Illinois Institute of Technology

Description

  • get_synteny.pl: Fixed issue with out-of-order locus_tags when inferring synteny from protein clusters
  • list_maker.pl: Fixed issue with multiple isoforms sharing the same locus_tag in GenBank files
  • Now generates heatmaps summarizing percentages of colinear bases between genomes (with paf_to_heatmap.py)
  • Fixed title in protein cluster heatmaps
  • --threads option now applies to minimap2 alignments and diamond homology searches

Files

PombertLab/SYNY-0.8e.zip

Files (12.8 MB)

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Additional details

Related works

Is supplement to
Software: https://github.com/PombertLab/SYNY/tree/0.8e (URL)