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Published April 10, 2024 | Version v4.0.3
Software Open

MouseLand/Kilosort: Kilosort v4.0.3

Authors/Creators

  • 1. Group Leader
  • 2. Janelia
  • 3. @int-brain-lab @cortex-lab
  • 4. HHMI Janelia Research Campus
  • 5. Princeton Neuroscience Institute
  • 6. Austrian Academy of Sciences - OEAW
  • 7. Univ. of Texas Austin
  • 8. Stanford University
  • 9. UC Irvine
  • 10. MRC Brain Network Dynamics Unit/University of Oxford
  • 11. Max Planck Institute for Plasma Physics
  • 12. Charité & Aix-Marseille Université
  • 13. University of Colorado Denver
  • 14. Hausser Lab

Description

This release adds pc_features.npy and pc_feature_ind.npy for use with feature view in Phy. Additionally, the GUI backend was updated from PyQt5 to QtPy, which is compatible with PyQt5, PyQt6, and PySide. This should result in fewer installation issues. If you previously installed Kilosort from source, you will need to reinstall after updating the code to update your GUI dependencies.

Several bug fixes are included as well:

  • dminx will no longer be determined automatically, the default value is 32. This removes a bug with that behavior related to checkerboard electrode layouts. You may need to update the value in the GUI under "extra settings," or click on "reset GUI," to update this.
  • Setting n_pcs to values other than 6 will no longer cause a crash.
  • Fixed bug that could cause negative spike times to be detected for first batch.
  • Added informative errors related to dminx and electrode spacing.
  • Misc fixes to GUI behavior.

Full Changelog: https://github.com/MouseLand/Kilosort/compare/v4.0.2...v4.0.3

Files

MouseLand/Kilosort-v4.0.3.zip

Files (157.1 kB)

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Additional details

Related works

Is supplement to
Software: https://github.com/MouseLand/Kilosort/tree/v4.0.3 (URL)