Published April 5, 2024 | Version v3
Dataset Open

CAbiNet: Joint clustering and visualization of cells and genes for single-cell transcriptomics

Authors/Creators

  • 1. Max Planck Institute for Molecular Genetics

Contributors

Contact person (2):

Project leader:

  • 1. Max Planck Institute for Molecular Genetics

Description

We here provide the data sets to reproduce the results in our manuscript "CAbiNet: Joint clustering and visualization of cells and genes for single-cell transcriptomics". Our package "CAbiNet" can be downloaded from https://github.com/VingronLab/CAbiNet. The scripts to reproduce the results in our manuscript can be found from https://github.com/VingronLab/CAbiNet_paper.

You can find the description of folders in 'Data.zip' in the README.md file.

Notes

During the peer review of our paper, we generated some new simulated datasets to evaluate the robustness of our model. The data sets are uploaded in this revised version. Please download both Data.zip in 'Version V_0.1' (https://doi.org/10.5281/zenodo.10260709) and robustness.zip in this version to reproduce our results.

Files

robustness.zip

Files (19.5 GB)

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md5:41332a80e038794b8a4fce346028f7e2
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Additional details

Related works

Is published in
Preprint: 10.1101/2022.12.20.521232 (DOI)
Is supplement to
Workflow: https://github.com/VingronLab/CAbiNet_paper (URL)
Is version of
Dataset: https://zenodo.org/records/10260709 (URL)

Dates

Updated
2024-04-05
Add more simulated data sets that have been generated to evaluate the robustness of our model.

Software

Repository URL
https://github.com/VingronLab/CAbiNet
Programming language
R

References