Published March 26, 2024 | Version v1
Dataset Open

Efficient statistical method for single-cell QTL analysis

Authors/Creators

  • 1. ROR icon Garvan Institute of Medical Research

Description

This upload contains data objects associated with our paper "Efficient statistical method for single-cell QTL analysis" introducing the SAIGE-QTL method.

  1. Results for genetic variants with p-value < 5E-6 from the genome-wide eQTL mapping results. 
    • trans_Plasma_tophits_multianno.zip
    • trans_Plasma_tophits_multianno.zip
    • trans_Plasma_tophits_multianno.zip
  2.  Set-based test results for rare/less frequent variants
    • rv_sign.txt
  3.  cis-eQTL results (with q < 0.05)
    • cis_SAIGE-QTL-qval-lt0.05.tsv

Files

rv_sign.txt

Files (59.3 MB)

Name Size Download all
md5:7fb0e470ced42e69de0d45d59f83def6
5.2 MB Download
md5:b21bfd683f1bc9e17c2bbded74193ca6
763.8 kB Preview Download
md5:2857bf231c9ce18c58d220e0a79932e5
17.1 MB Preview Download
md5:569a5816e895eb7f4eebddc38f02c351
29.4 MB Preview Download
md5:8619c6946c79df7f31e153758f824ad5
6.9 MB Preview Download

Additional details

Software

Repository URL
https://github.com/weizhou0/qtl
Programming language
R