JWST Calibration Pipeline

What's Changed

• Reset requirements-sdp.txt after release by @jhunkeler in https://github.com/spacetelescope/jwst/pull/8175
• fixed docstring typo; testing PR workflow by @emolter in https://github.com/spacetelescope/jwst/pull/8178
• JP-3505: Update ASN rules for NRS MOS compromise dither patterns by @hbushouse in https://github.com/spacetelescope/jwst/pull/8184
• JP-3501: Turn off emicorr by default by @drlaw1558 in https://github.com/spacetelescope/jwst/pull/8171
• JP-3503: Update outlier detection docs by @drlaw1558 in https://github.com/spacetelescope/jwst/pull/8177
• JP-3504: Bugfix for MRS 1d residual fringe correction by @drlaw1558 in https://github.com/spacetelescope/jwst/pull/8180
• Update sregion at the end of TweakRegStep by @izkgao in https://github.com/spacetelescope/jwst/pull/8158
• JP-3228: Remove 'grow' param from outlier_detection by @hbushouse in https://github.com/spacetelescope/jwst/pull/8190
• remove sphinx-asdf requirement by @braingram in https://github.com/spacetelescope/jwst/pull/8196
• Update RTD installation instructions by @hbushouse in https://github.com/spacetelescope/jwst/pull/8200
• JP-3088 updated bunit_data for the top multislit model by @jemorrison in https://github.com/spacetelescope/jwst/pull/8189
• JP-3510: Use all groups to flag bad IRS2 reference pixels by @melanieclarke in https://github.com/spacetelescope/jwst/pull/8197
• JP-3238: Include dispersion factor in PHOTOM correction for NRC grism by @stscirij in https://github.com/spacetelescope/jwst/pull/8207
• JP-3509: Cut cube collapse for autocentroiding short of 26 microns by @drlaw1558 in https://github.com/spacetelescope/jwst/pull/8199
• JP-2259: Tweakreg source finding by @emolter in https://github.com/spacetelescope/jwst/pull/8203
• require photutils 1.5+ by @braingram in https://github.com/spacetelescope/jwst/pull/8211
• Update min version of tweakwcs to 0.8.6 by @hbushouse in https://github.com/spacetelescope/jwst/pull/8216
• JP-3510: Flag bad refpix within integrations separately by @melanieclarke in https://github.com/spacetelescope/jwst/pull/8214
• Add a warning message in Log to cube_build if not valid data is found on detector by @jemorrison in https://github.com/spacetelescope/jwst/pull/8220
• switch to sphinx rtd theme by @braingram in https://github.com/spacetelescope/jwst/pull/8224
• update regtest conftest for pytest 8 by @braingram in https://github.com/spacetelescope/jwst/pull/8245
• Silence resample test warning by using non-zero data by @jdavies-st in https://github.com/spacetelescope/jwst/pull/8251
• JP-3515: Spec2Pipeline turns off NSClean for BOTS by @penaguerrero in https://github.com/spacetelescope/jwst/pull/8256
• JP-3532: MRS 1d residual fringe treatment of negative values by @drlaw1558 in https://github.com/spacetelescope/jwst/pull/8261
• JP-3325: bypass extract1d for SOSS observations in FULL subarray by @emolter in https://github.com/spacetelescope/jwst/pull/8225
• JP-3247: Retrieve pixel area from AREA reference file by @penaguerrero in https://github.com/spacetelescope/jwst/pull/8187
• remove unused test data files by @braingram in https://github.com/spacetelescope/jwst/pull/8266
• Release metadata for 1.13.4 by @jhunkeler in https://github.com/spacetelescope/jwst/pull/8271
• JP-3488 Input files to outlier_detection accidentally deleted by @penaguerrero in https://github.com/spacetelescope/jwst/pull/8263
• JP-3223: Extract_2d 'slit_name' parameter fails for NRS_MSASPEC slits by @penaguerrero in https://github.com/spacetelescope/jwst/pull/8272
• JP-3499: Handle too much masked data for NIRISS SOSS extractions in extract_1d by @emolter in https://github.com/spacetelescope/jwst/pull/8265
• Update stcal requirement to 1.6.0 by @hbushouse in https://github.com/spacetelescope/jwst/pull/8276
• Fix: models_grouped always return opened data models by @mcara in https://github.com/spacetelescope/jwst/pull/8191
• Use the same iscale value for resampling science data and variance arrays by @izkgao in https://github.com/spacetelescope/jwst/pull/8159
• JP-3483: fix atoca failures due to sparse matrix solver by @emolter in https://github.com/spacetelescope/jwst/pull/8273
• Fix NIRISS imaging regression test by @hbushouse in https://github.com/spacetelescope/jwst/pull/8277
• use tuple of exception classes instead of or by @zacharyburnett in https://github.com/spacetelescope/jwst/pull/8267
• JP-3525: Update jump and ramp_fitting docs to merge with stcal docs by @hbushouse in https://github.com/spacetelescope/jwst/pull/8253
• Add SlicedLowLevelWCS support to reproject and fix a bug by @izkgao in https://github.com/spacetelescope/jwst/pull/8172
• JP-3290 Isolate candidate processing into their own pools by @stscieisenhamer in https://github.com/spacetelescope/jwst/pull/8227
• Convert tweakreg segmentation connectivity to integer by @jdavies-st in https://github.com/spacetelescope/jwst/pull/8309
• JP-3539: replace all instances of deprecated scipy interp2d by @emolter in https://github.com/spacetelescope/jwst/pull/8291
• Suppress warnings about NaNs in input data from TweakRegStep by @jdavies-st in https://github.com/spacetelescope/jwst/pull/8308
• Add option to preserve reference pixels after IRS2 processing by @melanieclarke in https://github.com/spacetelescope/jwst/pull/8255
• Don't test specific log formatting for spec by @jdavies-st in https://github.com/spacetelescope/jwst/pull/8317
• JP-3423: fixed array shape mismatch in pixel_replace mingrad algorithm by @emolter in https://github.com/spacetelescope/jwst/pull/8312
• increase stdatamodels pins by @braingram in https://github.com/spacetelescope/jwst/pull/8322
• Delete jump step unit test that has been moved to STCAL by @mwregan2 in https://github.com/spacetelescope/jwst/pull/8319
• JP-3540: remove migrate_data and move_wcs scripts by @emolter in https://github.com/spacetelescope/jwst/pull/8321
• JP-3437: Address alternating column noise for NIRSpec IRS2 by @melanieclarke in https://github.com/spacetelescope/jwst/pull/8143
• pin pytest <8.1 by @braingram in https://github.com/spacetelescope/jwst/pull/8328
• JP-3553: Update background step handling of multi-ints exposures by @hbushouse in https://github.com/spacetelescope/jwst/pull/8326
• replace check_memory_allocation in resample by @braingram in https://github.com/spacetelescope/jwst/pull/8324
• import bytes2human directly from stdatamodels by @braingram in https://github.com/spacetelescope/jwst/pull/8325
• JP-2090: Update set_velocity_aberration to use DataModel by @emolter in https://github.com/spacetelescope/jwst/pull/8285
• JP-3465: Use TMEASURE in resample step by @emolter in https://github.com/spacetelescope/jwst/pull/8212
• JP-3492 LRS spectral images contain pixels with NaN values and DQ = 0 by @penaguerrero in https://github.com/spacetelescope/jwst/pull/8292
• bump gwcs pins by @braingram in https://github.com/spacetelescope/jwst/pull/8337
• JP-3560: Updating CHARGELOSS Flagging by @kmacdonald-stsci in https://github.com/spacetelescope/jwst/pull/8336
• JP-3088 fix bunit_data and bunit_err for MOS data products by @jemorrison in https://github.com/spacetelescope/jwst/pull/8294
• JP-3541: fixed tweakreg step KeyError due to empty gaia catalog by @emolter in https://github.com/spacetelescope/jwst/pull/8334
• JP-3463: Add average_dark_current handling to dark_current step by @tapastro in https://github.com/spacetelescope/jwst/pull/8302
• Jp-3169 store aperture location in FITS header by @jemorrison in https://github.com/spacetelescope/jwst/pull/8278
• Remove tophat kernel as an available option for resample kernel by @mcara in https://github.com/spacetelescope/jwst/pull/8364
• JP-3534 update to Sky Match docs by @jemorrison in https://github.com/spacetelescope/jwst/pull/8356
• update load_local_pkg exclude regex with regtest pattern by @braingram in https://github.com/spacetelescope/jwst/pull/8350
• JP-3552: use tmp_path instead of tmpdir, enable no:legacypath as a tox factor by @emolter in https://github.com/spacetelescope/jwst/pull/8327
• JP-3445: Exclude NINTS=1 from SOSS TSO3 associations by @hbushouse in https://github.com/spacetelescope/jwst/pull/8359
• Remove upper pytest pin, switch globals use to fixture in stpipe test by @braingram in https://github.com/spacetelescope/jwst/pull/8347
• JP-2943:Level_3 error: cannot reshape array in image3 pipeline by @stscirij in https://github.com/spacetelescope/jwst/pull/8305
• JP-3533 Update emicorr to run on FAST mode MIRI data by @penaguerrero in https://github.com/spacetelescope/jwst/pull/8270
• JP-3527 Update to docs for IFU outlier detection by @jemorrison in https://github.com/spacetelescope/jwst/pull/8360
• Fix bug in emicorr logic for finding matching ref file info by @penaguerrero in https://github.com/spacetelescope/jwst/pull/8375
• JP-3352 update residual fringe documentation by @jemorrison in https://github.com/spacetelescope/jwst/pull/8371
• JP-3550: Jump multi int by @mwregan2 in https://github.com/spacetelescope/jwst/pull/8304
• JP-3562: Extend snowball core by @mwregan2 in https://github.com/spacetelescope/jwst/pull/8303
• JP-3546: fix deprecations and improve warning filtering by @emolter in https://github.com/spacetelescope/jwst/pull/8320
• [SCSB-145] require Python 3.10 by @zacharyburnett in https://github.com/spacetelescope/jwst/pull/8365
• update metadata for 1.14.0 by @zacharyburnett in https://github.com/spacetelescope/jwst/pull/8380

New Contributors

• @emolter made their first contribution in https://github.com/spacetelescope/jwst/pull/8178

Full Changelog: https://github.com/spacetelescope/jwst/compare/1.13.4...1.14.0