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Published March 19, 2024 | Version v2.0.0-alpha.5
Software Open

PGScatalog/pgsc_calc: pgsc_calc v2.0.0-alpha.5

Authors/Creators

  • 1. EMBL-EBI
  • 2. @PGScatalog / @InouyeLab, University of Cambridge
  • 3. Wellcome Sanger Institute & HDR-UK

Description

Changelog

Improvements

  • Automatically mount directories inside singularity containers without setting any configuration
  • Improve permanent caching of ancestry processes with --genotypes_cache parameter
  • resync with nf-core framework
  • Refactor combine_scorefiles to improve speed and quality control processes

Bug fixes

  • Fix semantic storeDir definitions causing problems cloud execution (google batch)
  • Fix missing DENOM values with multiple custom scoring files (score calculation not affected)
  • Fix liftover failing silently with custom scoring files (thanks Brooke!)

Misc:

  • Move aggregation step out of report

Files

PGScatalog/pgsc_calc-v2.0.0-alpha.5.zip

Files (4.9 MB)

Name Size Download all
md5:74bc543992f6413310097cd2323af93a
4.9 MB Preview Download

Additional details

Related works

Is supplement to
Software: https://github.com/PGScatalog/pgsc_calc/tree/v2.0.0-alpha.5 (URL)