Published February 13, 2024
| Version v0.2.0
Software
Open
Nextflow Pipeline for Visium and H&E Data from Patient-Derived Xenograft Samples
Authors/Creators
- 1. The Jackson Laboratory for Genomic Medicine, Farmington, CT
- 2. The Wistar Institute, Philadelphia, PA
- 3. Hartford HealthCare, Hartford, CT
- 4. UConn School of Medicine, Farmington, CT
Description
This record contains the Spatial Transcriptomics Quantification (STQ) pipeline for 10x Visium and H&E-stained whole slide images. The pipeline source code repository is hosted at https://github.com/TheJacksonLaboratory/STQ.
Files
STQ-0.2.0.zip
Files
(6.6 MB)
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