Published March 14, 2024
| Version v1
Dataset
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Single-cell datasets for perturbation studies
Authors/Creators
Description
This is a collection of datasets to experiment, benchmark and develop computational tools for perturbation modeling studies in single-cell technologies.
Notes
The following datasets are available through SeuratData package:
adiposeref.SeuratData Azimuth Reference: adipose human
bmcite.SeuratData 30k Bone Marrow Cells human
bonemarrowref.SeuratData Azimuth Reference: bonemarrow human
cbmc.SeuratData scRNAseq and 13-antibody sequencing of CBMCs human
celegans.embryo.SeuratData 6k C. elegans embryos from Packer and Zhu et al (2019) C. elegans
fetusref.SeuratData Azimuth Reference: fetus human
hcabm40k.SeuratData 40,000 Cells From the Human Cell Atlas ICA Bone Marrow Dataset human
heartref.SeuratData Azimuth Reference: heart human
humancortexref.SeuratData Azimuth Reference: humancortex human
ifnb.SeuratData IFNB-Stimulated and Control PBMCs human
kidneyref.SeuratData Azimuth Reference: kidney human
lungref.SeuratData Azimuth Reference: lung human
mousecortexref.SeuratData Azimuth Reference: mousecortex mouse
panc8.SeuratData Eight Pancreas Datasets Across Five Technologies human
pancreasref.SeuratData Azimuth Reference: pancreas human
pbmc3k.SeuratData 3k PBMCs from 10X Genomics human
pbmcMultiome.SeuratData 10X Genomics PBMC Multiome Dataset human
pbmcref.SeuratData Azimuth Reference: pbmc human
pbmcsca.SeuratData Broad Institute PBMC Systematic Comparative Analysis human
ssHippo.SeuratData Slide-seq v2 dataset of mouse hippocampus mouse
stxBrain.SeuratData 10X Genomics Visium Mouse Brain Dataset mouse
stxKidney.SeuratData 10X Genomics Visium Mouse Kidney Dataset mouse
thp1.eccite.SeuratData ECCITE-seq THP-1 human
tonsilref.SeuratData Azimuth Reference: tonsil human
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The record is publicly accessible, but files are restricted to users with access.
Additional details
Dates
- Created
-
2024-03-14