Deep Learning Annotation Dataset and Images of Pea Aphids
Description
The small size and extensive polymorphisms of aphids make it difficult to identify larvae and adults solely based on their morphology. Here, we present an identification tool for the developmental stages of Acyrthosiphon pisum (Hemiptera: Aphididae) based on deep learning as a proof of concept. You Only Look Once (YOLO) algorithm is one of the most effective deep learning techniques for object detection. Although several studies have been conducted using deep learning technology for the detection and counting of tiny pests, the type of light source and size of the images were the limiting factors, as training was highly focused on uniform datasets and small insects. One way to overcome this problem is to introduce many types of datasets obtained from various light sources and microscopic magnifications. This strategy minimizes errors and omissions in aphid detection across all developmental stages in aphid individuals to the greatest extent possible. The experimental results showed that our modified YOLOv8 model could obtain over 95.9% and 99% accuracy for mean average precision (mAP) and Recall, respectively, under various light sources, such as yellow, white, and natural light, and stereomicroscope magnifications. This study showed an improved accuracy of aphid recognition at all developmental stages. The study presents a novel deep learning model utilizing the YOLO algorithm to identify developmental stages of A. pisum. This model achieves high accuracy across various light sources and magnifications, thereby enhancing aphid biology studies.
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base_test.zip
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Additional details
References
- Ahmad I, Yang Y, Yue Y, Ye C, Hassan M, Cheng X, Wu Y, Zhang Y (2022) Deep Learning Based Detector YOLOv5 for Identifying Insect Pests. Appl Sci 12:10167. doi: 10.3390/app1219101671
- Bass C, Nauen R (2023) The molecular mechanisms of insecticide resistance in aphid crop pests. Insect Biochem Mol Biol 156:103937. doi: 10.1016/j.ibmb.2023.103937
- Batz P, Will T, Thiel S, Ziesche TM, Joachim C (2023) From identification to forecasting: potential of image recognition and artificial intelligence for aphid pest monitoring. Front Plant Sci 14:1150748. doi: 10.3389/fpls.2023.1150748
- Blackman RL, Eastop VF (2017) Taxonomic issues. Aphids as crop pests, 1–36. Wallingford UK: CABI.
- Bochkovskiy A, Wang CY, Liao HYM (2020) Yolov4: Optimal speed and accuracy of object detection. arXiv arXiv:2004.10934. http://doi.org/10.48550/arXiv.2004.10934
- Braendle C, Davis GK, Brisson JA, Stern DL (2006) Wing dimorphism in aphids. Heredity 97:192–199. doi: 10.1038/sj.hdy.6800863
- Dixon AFG (2012) Aphid ecology: an optimization approach. Dordrecht: Springer Netherlands.
- Ishikawa A, Hongo S, Miura T (2008) Morphological and histological examination of polyphenic wing formation in the pea aphid Acyrthosiphon pisum (Hemiptera, Hexapoda). Zoomorphol 127:121–133. doi: 10.1007/s00435-008-0057-5
- Kumar N, Nagarathna, Flammini F (2023) YOLO-Based Light-Weight Deep Learning Models for Insect Detection System with Field Adaption. Agriculture 13:741. doi: 10.3390/agriculture13030741
- Lee AD (1966) The Control of Polymorphism in Aphids. Adv Insect Physiol 3:207-277. doi.org/10.1016/S0065-2806(08)60188-5
- Li X, Wang L, Miao H, Zhang S (2023) Aphid Recognition and Counting Based on an Improved YOLOv5 Algorithm in a Climate Chamber Environment. Insects 14:839. doi: 10.3390/insects14110839
- Lv H, Yao Y, Li X, Gao X, Li J, Ma K (2023) Characterization, expression, and functional analysis of TRPV genes in cotton aphid, Aphis gossypii Glover. Comp Biochem Physiol C: Toxicol Pharmacol 267:109582. doi: 10.1016/j.cbpc.2023.109582
- Moran NA (1992) The evolution of Aphid Life cycles. Annu Rev Entomol 37:321–348. doi: 10.1146/annurev.en.37.010192.001541
- Pang R, Chen M, Liang Z, Yue X, Ge H, Zhang W (2016) Functional analysis of CYP6ER1, a P450 gene associated with imidacloprid resistance in Nilaparvata lugens. Sci Rep 6:34992. doi: 10.1038/srep34992
- Peignier S, Lacotte V, Duport M-G, Baa-Puyoulet P, Simon J-C, Calevro F, Heddi A, da Silva P (2023) Detection of Aphids on Hyperspectral Images Using One-Class SVM and Laplacian of Gaussians. Remote Sens 15:2103. doi: 10.3390/rs15082103
- Pers D, Hansen AK (2019) The Effects of Different Diets and Transgenerational Stress on Acyrthosiphon pisum Development. Insects 10:260. doi: 10.3390/insects10090260
- Qiao JW, Fan YL, Wu BJ, Bai TT, Wang YH, Zhang ZF, Wang D, Liu TX (2022) Downregulation of NADPH-cytochrome P450 reductase via RNA interference increases the susceptibility of Acyrthosiphon pisum to desiccation and insecticides. Insect Sci 29:1105–1119. doi: 10.1111/1744-7917.12982
- Redmon J, Divvala S, Girshick R, Farhadi A (2016) You only look once: Unified, real-time object detection. Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition (CVPR), 779–788. doi:10.1109/CVPR.2016.91
- Shingleton AW, Sisk GC, Stern DL (2003) Diapause in the pea aphid (Acyrthosiphon pisum) is a slowing but not a cessation of development. BMC Dev Biol 3:7. doi: 10.1186/1471-213X-3-7
- Takayama T, Yashiro T, Sanada S, Katsuragi T, Sugiura R (2022) Evaluation of Detection Accuracy of Image Recognition for Automatic Counting of Rice Planthoppers Captured on Sticky
- Boards. Agric Inf Res 30:174–184. doi.org/10.3173/air.30.174 (in Japanese with English abstract)
- Tannous M, Stefanini C, Romano D (2023) A Deep-Learning-Based Detection Approach for the Identification of Insect Species of Economic Importance. Insects 14:148. doi: 10.3390/insects14020148
- Tian Y, Yang G, Wang Z, Wang H, Li E, Liang Z (2019) Apple detection during different growth stages in orchards using the improved YOLO-V3 model. Comput Electron Agric 157:417–426.
- Tzutalin (2015) LabelImg. GitHub Repository. 6. Available online: https://github.com/tzutalin/labelImg
- Wang K, Peng X, Zuo Y, Li Y, Chen M (2016) Molecular Cloning, Expression Pattern and Polymorphisms of NADPH-Cytochrome P450 Reductase in the Bird Cherry-Oat Aphid Rhopalosiphum padi (L.). PLoS One 11:e0154633. doi: 10.1371/journal.pone.0154633
- Yang S, Xing Z, Wang H, Dong X, Gao X, Liu Z, Zhang X, Li S, Zhao Y (2023) Maize-YOLO: A New High-Precision and Real-Time Method for Maize Pest Detection. Insects 14:278. doi: 10.3390/insects14030278
- Zhang H, Yang H, Dong W, Gu Z, Wang C, Chen A, Shi X, Gao X (2022) Mutations in the nAChR β1 subunit and overexpression of P450 genes are associated with high resistance to thiamethoxam in melon aphid, Aphis gossypii Glover. Comp. Biochem. Physiol. B, Biochem. Mol. Biol. Comp Biochem Phys B 258:110682. doi: 10.1016/j.cbpb.2021.110682
- Zhang L, Ding G, Li C, Li D (2023) DCF-Yolov8: An Improved Algorithm for Aggregating Low-Level Features to Detect Agricultural Pests and Diseases. Agronomy 13:2012. doi.org/10.3390/agronomy13082012