Published March 5, 2024
| Version v2.0.0
Software
Open
medema-group/bigslice: Version 2.0.0
Creators
- 1. Lawrence Berkeley National Laboratory
- 2. Oracle
- 3. Netherlands Institute of Ecology (NIOO-KNAW)
Description
- Clustering now uses cosine-like (via l2-normalization) distances (as in https://www.nature.com/articles/s41564-022-01110-2)
- pHMM databases have been updated to PFAM 35.0
- BGC class definition has been updated to antiSMASH v7.0.0
- Switching from HMMER to pyHMMER (speed-ups, can now be fully installed via pip)
- General speed improvement
- Ability to export pre-calculated BGCs and GCFs table into TSVs (use --export-csv parameter)
Files
medema-group/bigslice-v2.0.0.zip
Files
(3.5 MB)
| Name | Size | Download all |
|---|---|---|
|
md5:f5cf538a78b08f0e0489acfbc9783b2e
|
3.5 MB | Preview Download |
Additional details
Related works
- Is supplement to
- Software: https://github.com/medema-group/bigslice/tree/v2.0.0 (URL)