Data and Code Repository

Description

This is the data repository for manuscript Tuning Collective Behaviour in Zebrafish with Genetic Modification

• gate-analysis-20220405.tar.gz: The raw data and compelete data processing pipeline for the 2D swimming shape analysis. (Figure 2 in the manuscript)
• plot-experiment-schematic.tar.xz: The code to plot the experimental setup. (Figure 3a and 3b in the manuscript)
• analysis-one-fish-comparison.tar.xz: The code and data for the single--fish 3D behavioural analysis (Figure 3c in the manuscript).
• many-fish-analysis.tar.gz: The trajectory data and compelete data processing pipeline for one 3D many fish analysis (Figure 3d in the manuscript).
• plot-lengthscales.tar.xz: The code and data to plot the lengthscales and simulation results (Figure 4 in the manuscript).
• plot-shape-pca-method.tar.xz: The code to generate the PCA methodology summary plot (Figure S2 in the manuscript).