Published 2023 | Version v3
Dataset Open

The interkingdom horizontal gene transfer in 44 early diverging fungi boosted their metabolic, adaptive and immune capabilities

Creators

  • 1. Faculty of Mathematics, Informatics, and Mechanics, University of Warsaw
  • 2. Department of Molecular Phylogenetics and Evolution, Faculty of Biology, Biological and Chemical Research Centre, University of Warsaw
  • 3. Institute of Biochemistry and Biophysics, Polish Academy of Sciences

Description

Supplemental Material.

  1. The dataset includes all phylogenetic trees for supported and unsupported HGTs in NHX format. Maximum likelihood (ML) trees were inferred using IqTree [1] with automated model selection.
  2. The pipeline to detect horizontally transfered protein-encoding genes in a set of proteomes.

 

1. Minh BQ, Schmidt HA, Chernomor O, Schrempf D, Woodhams MD, von Haeseler A, et al. IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era. Mol Biol Evol. 2020;37: 1530–1534.

Notes

This work was supported by National Science Centre grants (#2017/25/B/NZ2/01880 to AM, #2019/33/B/ST6/00737 to PG., #2017/25/B/NZ8/00473 to J.P.)

Files

Final_trees.zip

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Additional details

Software

Repository URL
https://github.com/mciach/HGTin44EDF